Styela clava (leathery sea squirt): 120343949
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Entry
120343949 CDS
T07291
Name
(RefSeq) CMT1A duplicated region transcript 1 protein-like
KO
K10266
F-box and WD-40 domain protein 10
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sclv04121
]
120343949
Ubiquitin system [BR:
sclv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
120343949
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
WD40
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_SCAP
Beta-prop_EML_2
Beta-prop_TEP1_C
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
F-box-like
F-box
Beta-prop_WDR90_POC16_2nd
Beta-prop_IP5PC_F
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_RIG_1st
Beta-prop_HPS5
WD40_like
Beta-prop_DCAF12
Beta-prop_WDR19_1st
AvrM-A
Motif
Other DBs
NCBI-GeneID:
120343949
NCBI-ProteinID:
XP_039268934
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MSSVELNTKTCSIDSMHEPNIQKLHHVFHETEGWLLRAGKSVVRKFFLSLIQEIEDVNVI
QRLIILFSSASQKDYVYTRSRSNPGLPADIATKSFNKEFSFQLIKKCAADTLNWYRDTDD
HCKITFLLYIANLCVDTGIAHQACNLCKTLLNRRNVQIISKYHCEKSADDSDAASINSSV
FSYHTDEHPDLYQLAAVVSEYGDMDLSSPHSDTHSNVSHQKSSPTIRKHNRFHYEKDISS
IDTSIHDDHQPCLISTSYSALSGISPCRDFIGLLPVHLSKNILGMLSRSDLSSCALVHSR
WHQLVSQVRKDEFSLQIIKEEAILMQGVSAKGSNPNYAKIQKVLVPVVDEVTQDIVKKSI
HADVLAITPRRDGQEQLFESIYRGLETKFVEVEERNVYCGAYNLLVLDQRSNANRVISYA
GEDNLVIGFADKIVRTVDVSSGREKKPIMQGHPASITSLYMGTKEQGSVFSGSYDTTIRK
WNMNTGSCQLIMHGHRSSITSFDLFGDLLVSGARDGLVKIWNAATGSCTCTFKHSKKFSV
TCVQMRKDTIVSSCEKGLVKVWNLKTRKMVKVLKNHGGMKVNCVRFNDYFLLSGGNDDYL
LLWSMPGQQSICLKSYRHPKAVLCIELRYMCAITGCADGKIRVINMLSGDCLRVLRGNSQ
CDPIINIFATEDRLLVNTCSNCLVMHFEPITLEYNSSPGQINTETHQHARVFSKRPILST
IHSVNRANRFNLTNSADQRIFQRTSSAPPKWMKKDITKPFIHSAPGVRPPSHYIDLQPEF
RRPRSNTTMSVTSMRPYSSASHVNSKSGSRVVSACSRISNISSKTRVKIDSSSMAQSLPP
DEKKFGNKHSITTRDKLLMRVGMLSHVKKKERHNENTENNSISYFDRFYPRREYLEKPSS
TMTYPVSSAMSKFSKISVGKFSTEEDEIREVKSVFKEPISEELTRRHSSLSTWSRPSLDP
LRRNFRFVNEQEHSAQTVKPVKHLQIDNFLAQQLGITY
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctgttgaactaaatacgaaaacatgttctatagatagcatgcacgaacccaac
atacaaaagcttcatcacgtttttcatgaaactgaggggtggcttttacgtgcaggaaaa
agtgttgtcagaaaatttttcttgagtctgatacaagaaattgaagatgtcaatgtcata
cagcggttgatcatcttattctcatctgcttctcagaaagattatgtttatactcgatct
cgatctaatcctggtttacctgctgatatcgctactaaatcttttaacaaagaattttcc
tttcaattaatcaaaaaatgcgctgcagacacattgaattggtatcgggatacggatgat
cattgcaagatcacatttctgttatatattgctaatctatgtgttgatacgggaattgcc
caccaagcatgcaatctctgcaaaactttattgaatcgtcgaaatgtacaaattatttca
aagtatcattgtgaaaaatcagctgatgattctgacgcagcttcaatcaacagttcagtt
tttagttatcatactgatgaacatcctgatttgtatcaacttgcagctgttgtttcagaa
tatggcgatatggatttgtcatcaccgcattctgacactcatagcaatgttagtcatcaa
aagtctagtcctaccatcagaaagcataatcgatttcattatgagaaggacatttcatcc
attgatacctcaattcatgatgatcaccaaccttgtcttatatcaacatcttattctgca
ttgagcgggatttcaccgtgtcgtgatttcattggacttctgccagtacatttatcaaaa
aatattttgggtatgctttcacgatcagatctgtctagctgtgcactggttcattcccgt
tggcaccaactagtatcccaagtacgcaaagatgaattttctctgcaaattattaaagaa
gaagcaattttaatgcagggagtgtctgcaaaaggttcgaatccaaattatgcaaaaatt
cagaaagttcttgttccagttgttgatgaagtgactcaagatattgtcaagaaaagtatc
catgccgatgttcttgctatcacaccgaggcgtgatggccaagaacaattatttgaatca
atatatcgcggattggaaacaaaatttgttgaagttgaggaaagaaatgtttattgtgga
gcttacaatctacttgtacttgatcaaagatcaaatgcaaatcgtgttatcagttatgcg
ggagaagataatcttgtgattggtttcgctgataagatagtgcgaacagtggacgtgtca
tcaggaagggaaaagaaaccaatcatgcaaggacatccggcatccataacttcattatac
atgggcacaaaagaacaaggttctgtgtttagtggaagttatgacacaacaatcagaaaa
tggaacatgaacactggatcatgtcaattgatcatgcatggacatagaagttcaatcacc
agttttgatctttttggtgatttacttgtatctggagcacgagatggtcttgtgaaaata
tggaatgcagcaactggatcatgtacttgtaccttcaaacattccaaaaaattctcagta
acttgtgtgcaaatgagaaaagatacgatagttagttcatgtgaaaaaggtcttgtgaaa
gtttggaatttgaagacaagaaaaatggtgaaggttctgaaaaaccatggtggaatgaag
gtgaattgtgttcgtttcaatgattattttttactgagtggtgggaacgacgattattta
ttgttatggagtatgcctggacaacagagcatttgcctcaagtcctatagacatccaaag
gctgtgttatgtatcgaattacgatacatgtgtgcaattactggatgtgctgatggaaaa
atacgtgtcattaatatgttatctggtgattgtttgagagttttgagaggaaatagtcaa
tgtgatccaataattaatatatttgcaacagaagataggttacttgtaaacacctgcagt
aattgtctcgtcatgcattttgaacctatcactttggaatacaattcatcacctggacaa
attaatactgaaactcatcaacatgctagagtattttcaaaacgacctatattatcaaca
attcattcagttaacagggcaaacagattcaatcttactaattcagcagaccaaagaata
ttccaaaggacgtcaagtgctccaccgaagtggatgaagaaagacatcacaaaaccattt
atccattctgctcctggagttagaccaccatcacattatattgacttacaacctgaattt
agacgtcctagaagcaacacaacaatgtctgttaccagtatgagaccatatagttcggca
agtcacgtcaactcaaaatctggctcaagagttgtttctgcatgttcaagaatcagtaat
atttcttctaagacacgtgtcaagattgattcttcatccatggcacagtctctaccacct
gatgaaaaaaagtttggaaataaacattctatcacaacaagagataagttgctgatgaga
gttggaatgctgagtcatgttaagaagaaagagcgacataacgaaaatacagagaataat
tccatcagttattttgacagattttatccaaggcgagaatatctggagaagccttcgagt
acaatgacttatccagtttcttcagcaatgtcaaaattttctaaaatatcagttggaaaa
ttctcaacagaagaagatgaaatcagagaagtcaaatctgtgtttaaagaaccgatctcg
gaagaactaacacgaagacattcatctttgtctacatggagtaggccatcattagatcct
ctcagaagaaatttcagatttgtaaatgagcaagagcattcggcacaaacagtaaaaccc
gtgaaacatcttcagattgacaatttcttggctcagcaacttggaatcacatactaa
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