Styela clava (leathery sea squirt): 120344184
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Entry
120344184 CDS
T07291
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120344184
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120344184
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120344184
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120344184
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
120344184
NCBI-ProteinID:
XP_039269228
LinkDB
All DBs
Position
Unknown
AA seq
736 aa
AA seq
DB search
MADKRRLQGEIDRCLKKVQEGVDTFEDIWQKLHNAANTNQKDKYESDLKKEIKKLQRLRD
QIKTWAASNEIKDKKNLLDNRKLIETQMERFKVVERETKTKAYSKEGLGLAAKIDPAQKE
REETMQWLQHTIDKLGLQVEIFESRIESNSSHSRKKKIDGEKQKQNDEMKAHVERHKFHI
NKLETLMRMLDNQTITSERIMELQDDLEFYLEACEDPDYEENEFLYEDLNLDEALTATVV
PATSPVEKHMNNSLTNSNSSKGDEDVKSLIDPTLSTSPVPNNGHSSSSSHNSKDDTDSRS
RNRSGASDDILSPRKGSLTSYSSTANSSKPASRSHSTSTTPNKLNQKSTHVQAYAAAASG
QPTQNQVHHSQTISDTHSNAVEHSGLGAVKNLNKSLQKSVEKSTTWQTPNNVVSSSISIT
NLDVQSTVNSLLTSVASSGLGINGVVTAVPEEKSAPSPLDIVLVSKLTNDLSTTQPSKVP
TPISLPEVQPSPHDNLVTSAFLNNNFNLKSIAEQAVVEAGLGQPEQTSSPFSQDSNLSIN
TSAPSKADLTSLSSSMQQQQSNLIRQIPNGSGETRMAPLLGVAPLGPVPLNKDNMYQQAM
LEASWRHMPHPSDSERLRHYLPRNPCPTPAYYHQTPLPHHDSIDFYLRLSTETLFFIFYY
MEATKAQYMAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKK
EGFTFEYRYLEDRELP
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaacgacgattgcaaggagagattgatcgatgtctaaaaaaggtgcaagaa
ggtgttgatacatttgaagatatttggcaaaaacttcataatgcggccaacacaaatcaa
aaagataaatatgaaagtgatctcaaaaaagagattaaaaaacttcaaagattacgggac
caaatcaaaacgtgggccgcttcgaatgaaattaaggataaaaagaatttactggacaat
agaaagttaattgaaacccaaatggagcggtttaaagttgtcgaaagggaaacaaaaaca
aaagcctattcaaaagaaggcttaggtctcgcggcgaaaattgaccctgcacaaaaagag
agagaagagacgatgcagtggttacaacatacgattgataaactcggtctacaagttgaa
attttcgaaagtagaattgaaagtaattcatcacattctcgtaagaagaaaattgatggc
gagaagcaaaaacaaaatgatgaaatgaaagctcatgtggaaaggcacaagtttcatata
aacaagttggaaacattaatgagaatgttagataatcaaaccatcacatcagagaggatt
atggaattgcaagatgatttggaattttatttggaagcttgtgaagatccagattatgaa
gaaaatgaatttttgtatgaagatctcaatttggatgaagcacttacagctaccgttgtt
cctgcaacatctccagttgaaaagcatatgaataatagtctgactaatagcaacagttcg
aagggggatgaagatgtgaaatctcttattgatccaactttgtcaacatcacccgttccc
aataatggtcattcatcttcatcaagtcataacagtaaagatgatactgattcaaggagt
aggaatagatctggagcatctgatgatattttatcacctaggaagggttctttgacgtcg
tattcatctactgccaattcatcgaaacctgcatctagaagtcattccacgagcacaaca
cctaacaagctcaatcagaagagtacgcacgtacaggcatatgcagctgcagcaagtgga
caaccgacgcaaaatcaagttcaccattcgcaaacgatatcagatacacattccaatgcg
gttgaacatagtggattaggagcagttaaaaatctcaataagtcccttcaaaaatcagta
gaaaaatcaacaacttggcaaacaccaaataatgttgtttcttcatcaatttcgataaca
aatttagatgtgcaaagcacagtgaatagtttgttgacatctgtggcttcaagtggatta
ggtattaatggtgttgttactgcagttcctgaagagaagtccgcgccttcaccgttggac
attgttttggtatcaaaactgacaaacgatttgtcaacaacacaaccaagtaaggtacca
actccaatatcattacctgaagtacaaccctctccacatgataatctggttacatctgcc
ttcttgaataataattttaatttaaaaagcattgcagaacaagcagtcgtggaggcaggt
ttaggacagccggaacagacatcttcacccttttctcaggattctaatctatcaataaac
acttctgccccatcaaaagcagatttgacgtctttgagcagctcaatgcaacaacagcag
tccaacttgatacgacaaatccctaatggctccggggaaaccagaatggctcctttactt
ggtgttgcacctctcggccctgttccgcttaataaagataacatgtaccagcaagcaatg
ctcgaggcttcttggagacatatgccgcacccatctgattccgaaaggcttcgccattac
ttgccaagaaatccgtgccccacaccggcatactaccaccagactccacttcctcatcac
gattccatagatttttatcttcgactttcgacggaaacattattctttatattttactac
atggaggcgacgaaagctcagtacatggctgctaaagctttgaaaaaacaatcatggagg
tttcacaccaagtacatgatgtggtttcaaaggcacgaggagccaaaaacgatcactgat
gaatatgaacaagggacatatatttattttgactacgagaaatggggacagcgcaaaaag
gaaggtttcacatttgagtacagatacctggaagacagggagcttccataa
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