Styela clava (leathery sea squirt): 120344288
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Entry
120344288 CDS
T07291
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1-like
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120344288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sclv03021
]
120344288
Enzymes [BR:
sclv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120344288
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120344288
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Phage_zn_bind_4
Motif
Other DBs
NCBI-GeneID:
120344288
NCBI-ProteinID:
XP_039269358
LinkDB
All DBs
Position
Unknown
AA seq
1736 aa
AA seq
DB search
MVSRWEIPSKVLDGMKFTCYSSDEIRALSVKEVTNPQSLNFLLHPTENGLYDPVFGPPTR
LDDCKTCGLGSSGCPGHLGHIELPIPIYQPVFFKTLLDLLRAMCLKCHRFLVDRSKRLLL
IYKLRAINKGMLQLVNELEETFYKASQDFIEQGIEGVDFETLADELEKVYSSDCIDSSAC
EDNNKPNNHGQTYFSRNANECRRNIVKDFFTQTHSKKKCDACASVCAAFRSENSKIFVVA
SKDKTKETTQYYMTPIVAREHISELWNNDRELLANIYGAFHDASFSDKKHSATDLTNPES
GDLLKTPERSSAIDVLFLTVIPVPPSKYRPVMAVNGKKFENPQTAIYSKIILDCILLRTL
MVNLNEEEPGLVEDVSNKKINVRSLGNDEPVEEVKISDRSLDMLKAIPGKTKAEKLENCW
DRLQQHVNMIFDSESGRSSLPSSEQCPGIKQKLEKKAGLFRKNMMGKRVNYAARSVISPD
PYIATHEIGVPLCFASKLTYPTPVTPWNVRQLREHVINGPDAYPGATIVVQEDGSKILLK
ADNPRQRLAIAKQLMAPQSDTKKRKPGLKGIKTVMRYMQNGDVMLLNRQPTLHKGSIMAH
KVRVLPGEKTLRLHYANCKSYNADFDGDEMNAHFPQNELCRAEAFELMSTNSQYLAGKDG
KPLSGLIQDHMVAGVHMSIRGRYFTKEQYYQLTYNALMHIPRKIKLLPPTILKPEKLWTG
KQIFSTILLNITPTGSPLLYLQGSSKIRYSDWIKENSRAHYIKPKELCESEVVIRESQLL
CGVLDKNHYGASEYGLVHAMYELYGCKISGELLTCLARLFTAFLQQYRGFSLGVEDILVT
APADSGRKKVIKKTLNSGQSDLAAAVGLSDENDVEAIASKMQNAHISKITEVEDGLAVFD
HAIKKTSNDVNDRIAKYCTGNGLNKTFPDNNLQLMVLSGAKGGAVNCMQISCLLGQIELE
GRRPPLMCSGRSLPSFRPYNITLRAGGFISQRFLTGIRPQEYFYHCMAGREGLVDTAVKT
SRSGYLQRCLIKHLEGIVLAYDLTVRDSDGSVMQFFYGEDGLDIGKQSYLNTKQHQFLIE
NFKAESKLLPSYETIESTCIDTTKAEKMWRKYNRKIKRKKKAEKKIRKERGERVDDTRKS
PFLQYSLEHPELSKSKIMLQWRNLTSEQKEQLEDKVEIFKNPDPIFSIIRPDMNYGSMSE
TFRKNLEEYLKTNPDNLPEKKKRKNKVPTLEKVKAMLSLKYQRSLCQPGEAVGLIAAQSI
GEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKHIKTPQVIVPVLPGKEKHAKKL
QKMLSSVELQQVLNKIHVQEHLDVDSKTAGHRSRQSKIILELLPEKQFAKETAIRRPAIL
GFIEKTFIPALLSSINQQIKRREQEEMVFSQKKGRSNSNEDSINAEPDEDIGEEPTTEPE
SKDKVNDEDDNDDDDEAFDQDDAKKGKNKQDFEEEEEEEDEADAQEVDLEELPQEFSDLE
CILDKTVCQDYQERVSKVKQMSVQTVCVLDYSFDAENSGWCKIIIDMPLKAAQLNIVSIV
EHEAKTCYVRKISGISRCVLQQNPQNSEEKRIATEGINFYKLFNYGDILDLRRLQCNCVH
SIEVTYGVEAAVRVIQTEVANVFGAYGIQVNKRHLSLVADYLCFSGKYNGFNRAGIDNCA
SPLQQMTYESTVTFLRDAALAGRWDSLQSPSARIVAGQIVKTGTGCVNLRIPLLGF
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggtttccagatgggaaataccatccaaggttcttgatggaatgaaatttacatgctat
agttctgatgaaataagggctttgagcgtgaaagaagtcacaaacccacaaagcttgaac
ttcttgctacatccaacagaaaatggtctctatgatcctgtatttggtccacccaccaga
cttgatgactgtaaaacatgtggattgggatcgagtggatgtcctggccatctgggacat
attgaattacctatacccatctaccaaccagtatttttcaagacactgcttgacctctta
cgtgcaatgtgtttgaaatgccatcgattcctagttgatagatcaaagcgacttctcctt
atttataaattgagagctatcaacaaaggaatgcttcaacttgttaatgaactggaagaa
actttttataaggcatcacaagattttattgaacaaggaatagagggtgtagactttgaa
acactcgctgatgagttggaaaaagtgtattcttcagactgcattgattcttcagcctgc
gaagataacaataaaccaaataatcatggtcagacttatttttcaagaaatgcaaatgaa
tgcagaagaaatattgtcaaagatttttttacacaaacacatagcaagaaaaaatgtgat
gcatgtgcttcagtgtgtgccgcattcagatcggaaaatagcaaaatatttgttgttgca
agtaaagacaaaacaaaggaaacaactcagtactacatgactcctattgtagcgagagaa
cacatatcagaattatggaataacgatagagaattattagcaaacatctatggagctttt
catgatgcttccttttctgataaaaagcattctgctactgatcttacaaatcctgaatcc
ggtgatttattaaagacgcctgaaagatcttctgctatagatgtactttttttaactgtt
atacctgttcccccttccaaatatcgacctgtgatggccgtgaatgggaaaaaatttgaa
aatccacagacagcaatttattccaagatcatacttgattgtatattacttcgaacgctg
atggtaaatttaaatgaagaagagcctggacttgtagaagatgtttcaaataaaaaaata
aatgtcagaagtctgggaaatgatgaaccagtggaagaagtcaagatttcagatagaagt
ctagacatgctgaaagcaattccaggcaaaacgaaagcagaaaagctggagaattgttgg
gatcgcttgcaacagcatgttaatatgatattcgattctgaatcgggtcgatcttcattg
ccatcatctgagcaatgtcctggaatcaaacaaaaattggaaaagaaagcaggacttttt
cgaaaaaacatgatgggaaaaagagttaattatgcagcaagatctgtgatatctccggat
ccttatattgctacacacgaaataggagtccctttatgttttgcttccaaactaacctat
cccacaccagtcactccatggaatgtcaggcaacttcgggaacatgtcatcaatggacca
gatgcttaccctggtgcaacaatagttgttcaggaggatgggtcaaaaattcttttaaaa
gctgataatcctcgacaacgactcgcaattgcaaaacaacttatggctcctcaaagtgac
acaaagaagcgaaaacctggattgaagggaattaaaactgtgatgcggtatatgcaaaat
ggtgatgtaatgctattgaatcgacaacctactctccataaaggatctataatggctcac
aaagttcgtgtattgcctggggaaaaaacattgaggctacattatgctaattgtaaatcc
tacaacgcagattttgatggtgatgaaatgaatgcacattttcctcaaaacgaactatgt
agagcagaagccttcgaattaatgtcgaccaactctcagtaccttgctggcaaagatggg
aaacctctaagtggattgatccaagatcatatggttgctggtgttcacatgtctatcaga
ggaaggtactttacaaaagaacaatactatcaacttacatacaatgcattaatgcatatt
ccaagaaaaatcaagcttctacctccaacgattttgaaacccgaaaaactatggacagga
aagcaaattttcagtacaatattgctcaacataacgcctactggttctccattgctatat
ttacaaggatcatcgaagattagatattctgattggataaaggagaattccagagctcat
tacataaagccaaaagaactatgtgaatcagaggttgttatccgggaaagtcaacttctt
tgtggagtgttggataaaaatcattatggcgcatcagaatatggactcgttcatgcaatg
tatgagctttatggatgtaaaatcagtggagaattattaacatgcctcgcaagattattc
actgcatttttacagcagtatagaggattttcattaggtgtggaagatattctcgtaaca
gctccagcagattctggtagaaaaaaagttataaagaaaacattgaacagtggacagagt
gatcttgctgctgctgttggtttatctgatgaaaatgatgttgaagcaattgcatcaaaa
atgcagaatgctcatatctcaaaaataactgaagttgaagatggactcgcagtatttgat
catgcaatcaagaaaacaagcaatgatgtgaatgatagaattgcaaaatattgtactggg
aatggactaaataaaacttttcctgacaacaacttacaactcatggttttatctggtgca
aagggtggtgcggtcaattgtatgcagatatcatgtttgcttggacagattgaattagaa
ggtcgtcgtccaccactgatgtgctctggaagatctcttcctagttttcgaccatataat
ataacactacgagccggaggtttcatttctcaaaggtttttgactggaattcgacctcag
gaatatttttatcattgcatggcgggaagagaaggcttggtggatactgctgtgaaaact
agtagatctggatatttacaaagatgtttgatcaagcatttggaaggaatagttcttgct
tatgatttgactgtacgggacagtgatggaagtgtgatgcaatttttctatggtgaagat
ggattagatattggaaaacaatcgtaccttaatacaaaacaacatcaatttttaatagaa
aatttcaaggctgagagcaagttacttccatcatatgaaactattgaatcaacatgcatt
gacacaactaaagcggaaaaaatgtggagaaaatataatagaaaaataaaaagaaagaaa
aaggcagaaaagaaaatcagaaaagaaagaggggaaagagttgatgacacaagaaaatca
ccttttttgcagtattcattagaacaccctgaattaagtaaatccaagataatgctacaa
tggagaaatctcacttcagagcagaaagagcagctggaagacaaagttgaaatatttaaa
aatccagatccaattttttcgataataagaccagatatgaactatggatccatgtcagaa
actttcagaaaaaaccttgaagaatatttgaaaacaaatccagataatttaccagaaaag
aagaagagaaagaataaagtgccaactttagagaaagtcaaagccatgctttctctcaaa
tatcaacggtcactttgtcaacctggtgaagcagttggtttgatagcagctcagagtatt
ggagaaccatctacacagatgactctgaatactttccattttgctggaagaggtgaaatg
aatgtaacacttggtattccaaggttgcgtgaaatattaatgactgcttcaaaacacatt
aaaaccccacaagtcatcgttcctgttctacctggtaaagaaaaacatgcaaaaaaatta
caaaaaatgctgtccagtgtagaactgcaacaggttttgaacaagatccatgtccaagaa
catttggatgttgattcgaaaaccgctggtcataggtcacgtcagagcaaaattattttg
gaacttctaccagaaaaacaatttgccaaagaaactgcgataagaagacccgcaatatta
ggtttcatagaaaaaacatttattccagctcttttaagcagcataaatcagcaaattaaa
cgcagagaacaagaagaaatggttttcagtcagaaaaaaggtcgtagtaattccaatgaa
gattctattaacgctgagccggatgaagatattggagaagagccaaccactgagcctgaa
tcgaaagacaaagtaaatgatgaggatgacaacgatgatgatgatgaagcttttgaccaa
gatgatgcaaagaaaggaaaaaataaacaagattttgaagaagaagaagaagaggaagat
gaagcagatgctcaagaagtcgatctggaagaattaccccaagagttttcggatttggaa
tgtattctggataaaactgtttgtcaagattaccaggagagagtatcaaaagtaaaacaa
atgagtgttcaaactgtttgtgttctggattatagttttgatgctgaaaatagtggatgg
tgcaagataatcattgatatgcccctgaaagctgcacaactcaatatagtgtcaatagtg
gagcacgaagcgaagacatgttatgttcggaagatcagtggcataagtcgttgtgtgctc
caacaaaatccacagaattctgaggagaagagaattgccactgaaggaataaacttttat
aaactctttaattacggggatatattggaccttagacggttacaatgtaactgtgttcac
tcgattgaagtaacatatggagttgaagctgctgttcgtgtaattcaaacagaagttgcg
aatgtgtttggtgcctatggtattcaagttaacaagcgacatttaagcttggttgctgac
tatctttgtttttcgggaaaatacaatggtttcaatcgagctggtatcgataattgtgct
tcacccttgcaacaaatgacttatgaaagtacagttacttttctaagagatgctgcatta
gcaggacgatgggattcattgcaatcaccttctgcaagaatcgtagctggacagattgtt
aaaactggtactggttgtgtcaatctacgtattccactgctgggattctga
DBGET
integrated database retrieval system
