Styela clava (leathery sea squirt): 120344985
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Entry
120344985 CDS
T07291
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120344985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120344985
03012 Translation factors [BR:
sclv03012
]
120344985
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120344985
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120344985
Translation factors [BR:
sclv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
120344985
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
OB_NTP_bind
HA2_C
Helicase_C
AAA_22
nSTAND3
ATPase
AAA_19
NPHP3_N
AAA_23
ResIII
HA2_N
Rad17
NB-ARC
ABC_tran
Motif
Other DBs
NCBI-GeneID:
120344985
NCBI-ProteinID:
XP_039270270
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MSSTRLFWGHFTKLKYFKNSILRSTMDHKRTYGNYSGQSGTGNNPYSGEWYKDDNPPQKS
QVYSRGGRRGGRGGRRGGYGRARRSNMDDNGEWKQRSAGRGRGRGGHPSGLKGRDIGLWY
AQRGKERRLEKEMHNRKTIHMDEQQIGQVNHALSDARFQSKKQEIPDSKVSGSSHEADFG
CIENESPENVSDFLPFSDNDKSWFSTPLRLGADLTINKTLKDELAEKVNDSHYIGMQKFR
KTLPAFKKRIDLMKLINSNQVIVISGETGCGKTTQVPQFILDDAIENNNGMACKIVCTQP
RRISAISVAERVADERSERCGEISSCGYQIRLDSKLPRSSASILYCTTGILIQCLKSDPL
LQNISHIVLDEIHERDLQTDFLITIVKNIVETRNDLKVILMSATLNAELFSSYFDNCPCF
HIPGFTFPVQSLFLEEIMDVTKYDPPDAAYRLIDDVERFNNGQMKRREAEKFSKKNIDRD
IAKKWREYEKTELSSRFPEWACDKLYAMHLYTQSGIDPQLIVATIKYIVNEQPRGAILVF
VPGWMDIKAVHDQLQRDRQFSPSRFLIIPLHSMMPTANQRQVFDRPPPGVTKIVIATNIA
ETSITIDDVVHVIDSGKIKLTDFDHMTNIASLQMRWVSRANAKQRNGRAGRVQEGFCYHL
YTKLQEQDFSDFLLPEMLRTPLDQLCLQIRVLELGKIEVFLSKVMEPPPSEGIELSIQKL
IALSAMDVDQRLMPLGYHLARLPVEPQIGKMILMGAIFSCLDPVLTIAANLSFKDPFVVP
LGKEREADRRKKDIADGTNSDHLMLLNAYQGWESSVREGHREESQYCWDNFLSKSTLGML
RDMKGQFAQQLHSIGFCSSPSPKDPIMNKLSNNKKVVLAVVCSGLYPNIAKINFSKPYKP
VKIITKSEKVNFHPKSVNYEACGEKFSERWLCYYLKMKTSVIYLFDTSEVTAYPLLFFGG
NISAYYDLKMKGDVIAVDDWIVFKSKPNIAKLVKDLRIALDDILEKKIRDPDITVLTNND
TASKVLSSIVDLITTE
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcactaggttgttttggggccattttactaaattgaaatattttaaaaactcc
atccttcgcagcactatggatcataaaagaacctatggaaactattctgggcaaagcggg
actggaaacaacccatattctggtgaatggtataaggatgataaccctcctcaaaaaagc
caagtatattctagaggtggaagaagggggggaagaggtggcagaaggggtggatatggc
agggcacgtagaagtaacatggacgataatggagaatggaaacaacgttcagcaggcagg
ggtagaggaaggggcggacatccttcaggattgaaaggccgggatatcggactgtggtat
gcacaaagaggtaaagaaagaagacttgaaaaagaaatgcacaacaggaaaacaatacat
atggatgaacaacaaattggacaagttaaccatgcattatcagatgcaagatttcaatcc
aaaaagcaagagattcctgatagcaaagtttcgggttcctctcacgaagcagattttgga
tgtattgagaatgaatcgcctgaaaatgtttcagattttttaccattttcagacaatgat
aagtcatggttttcaacaccactacgattaggcgcagaccttaccataaataaaacatta
aaagacgagttggcagaaaaggtgaatgattcgcattatattggaatgcagaagtttcgt
aaaactctgcctgcttttaaaaagagaattgatctaatgaagctgatcaattcaaaccaa
gttattgttattagcggagaaaccggttgtggcaaaacgactcaagtcccacaatttatt
ctcgacgatgctatcgaaaataacaatggcatggcatgtaagattgtttgcactcaacca
agaagaatatcagctatttcggtggctgaaagagttgctgatgagagaagtgaacgctgt
ggtgaaattagcagttgtggataccaaatacgacttgattcgaagttaccaagatcaagc
gcatcaattttgtattgtacaacgggcattttaattcagtgtttgaaatctgatcctcta
cttcaaaatattagccacatagttttagatgaaatacatgaacgggatctccaaacagat
tttcttatcacaattgttaaaaacattgtagaaactagaaatgatttgaaagttatttta
atgagtgctactcttaatgctgaacttttttcatcatattttgataattgcccttgtttt
catattcctgggtttacgtttcctgttcaaagtttatttttagaagaaatcatggatgtt
accaagtatgacccaccagatgcagcgtatcgtttgatcgatgacgttgagaggttcaac
aatggtcaaatgaaaagacgagaagcggaaaaattcagtaagaaaaacatagatcgagac
atagcaaagaaatggagagaatatgaaaaaacagaactttcatcaagatttccagaatgg
gcttgtgataagctatacgcaatgcatctctacacacaaagtgggattgaccctcaacta
attgtggcaactataaaatatatagtcaatgaacaaccaagaggagcaatacttgttttt
gttcctggctggatggatataaaagctgttcacgatcagttacaacgggatcgtcaattt
tctccatcacgattcttgattattccactacattctatgatgccgacagccaatcaaaga
caagtatttgaccgaccaccaccaggcgtgaccaaaatcgtcatagcaactaacatagct
gaaacttctatcacaattgatgatgtagttcatgtaatagactccggtaaaataaaatta
accgacttcgatcacatgacaaatattgcttctttacaaatgagatgggtaagtcgtgcc
aatgctaaacaacgcaatggcagggcgggacgtgtgcaagaaggcttctgttatcattta
tacacaaagcttcaagaacaagatttttcagatttcctgttgccagaaatgttacgtaca
cctttagatcaactgtgtctgcaaatcagggtcttagaattaggtaaaattgaagttttt
ttgtcaaaagttatggaaccacctccatctgaaggaattgaactttcaatacaaaagctc
attgctttaagcgcaatggatgttgaccaacgacttatgccacttggatatcaccttgca
agactccccgtcgaacctcaaataggaaaaatgattcttatgggtgcgatattttcatgt
cttgatcctgttttgacaattgctgcaaatttaagtttcaaagatccttttgttgttccg
cttggtaaagaaagagaagcagacaggaggaagaaagacattgcggatgggaccaatagt
gatcatcttatgcttttaaatgcatatcaaggatgggaaagttctgtaagagaagggcat
cgagaggagtcacaatactgctgggataattttctttctaaatctactttgggaatgtta
cgagacatgaagggacaatttgctcagcagttacactccattggtttctgttcttctcca
tcacctaaagatccgatcatgaacaagctatcaaataataagaaagttgttttggctgtt
gtatgttctggactttatccgaatattgctaaaattaatttttcaaaaccgtacaaaccg
gtaaaaattataacaaaatcagaaaaggtcaactttcatcccaaatctgtaaactatgaa
gcatgtggagaaaaatttagtgaacggtggctctgttattatttaaaaatgaaaactagc
gttatctatcttttcgatacatcagaagttacagcctaccctctattattttttggcggg
aatatatcagcttattatgatttaaaaatgaaaggtgacgtaatagcagtcgatgattgg
attgttttcaaatcgaagcccaacattgctaaactagttaaagatttgagaattgcactt
gatgatattttggaaaaaaagattagggatccagacatcactgttttaactaataatgac
actgctagtaaagttctttcgtctattgttgatttaattacaactgaataa
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