KEGG   Styela clava (leathery sea squirt): 120345018
Entry
120345018         CDS       T07291                                 
Name
(RefSeq) replication factor C subunit 3-like
  KO
K10756  replication factor C subunit 3/5
Organism
sclv  Styela clava (leathery sea squirt)
Pathway
sclv03030  DNA replication
sclv03410  Base excision repair
sclv03420  Nucleotide excision repair
sclv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sclv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    120345018
   03410 Base excision repair
    120345018
   03420 Nucleotide excision repair
    120345018
   03430 Mismatch repair
    120345018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sclv03032]
    120345018
   03036 Chromosome and associated proteins [BR:sclv03036]
    120345018
   03400 DNA repair and recombination proteins [BR:sclv03400]
    120345018
DNA replication proteins [BR:sclv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    120345018
  DNA Replication Termination Factors
   ELG1-RFC complex
    120345018
Chromosome and associated proteins [BR:sclv03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    120345018
DNA repair and recombination proteins [BR:sclv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     120345018
  Check point factors
   HRAD17(Rad24)-RFC complex
    120345018
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid Rad17 DNA_pol3_delta2 AAA AAA_lid_RFC1 AAA_22 AAA_11 nSTAND6 AAA_16 T4SS-DNA_transf AAA_5 Resolvase Sigma54_activ_2 Rep_fac_C AAA_30 DUF815 ABC_tran
Other DBs
NCBI-GeneID: 120345018
NCBI-ProteinID: XP_039270321
LinkDB
Position
Unknown
AA seq 356 aa
MSLWADKYRPKCLSKLDYHKRQADDIRKLVKNGDFPHLLVYGPSGAGKKTRIMCLLRELY
GAGVERLRIEKHHFTTPSNKKIELAALASNYHIEVNPSDAGINDRVVIQELIKTVAQSNQ
LEVTAQRKFKVIILTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSRVIPALRSRCL
CIRVSAPTELEIVSIIQYACKKEGLTIPVELANKIASLSKRNLRRALLMAETCRVRQYPF
SPNQEVMEPDWEIYLRETANAIVSEQSPQRLLEVRQRIYELLTRCIPPEIIMKGLYNELA
NNCDGTLKTELSQIAAQYEHQLRLGTKSVYHIEAFIAKFMCIYKKFLEDGLDAMIF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgagcttgtgggcggacaagtatcgacctaaatgtctttcgaagttggattaccataag
cgtcaggcagatgacataagaaagttggtgaaaaatggggactttccccaccttctggtt
tatggaccatccggagcaggaaagaagaccaggataatgtgtttgcttcgtgaactttat
ggtgctggcgtggagcgcttaagaattgaaaagcatcattttacaactccttcaaataag
aaaatagaactcgctgcccttgctagcaactatcatattgaagttaatccaagcgatgca
ggaataaacgatagagttgtcatccaggagttgataaaaactgttgctcagtcgaaccaa
ttagaggttactgctcagcgaaaattcaaggttataatcttgaccgaagtcgacagactg
acaagagatgctcaacatgcactacgtaggacaatggaaaagtacatgtcaacatgccgt
ctcattctctattgtaattctacaagcagggttataccagctttaagaagtagatgttta
tgtatcagagtttctgcgccaacagaattagaaattgtttcaattattcaatatgcctgc
aaaaaagaaggactaactataccagtggaacttgctaacaaaattgcatctttgtctaaa
agaaatctacgtcgggcactgctaatggcagaaacatgtcgtgtacgacaatatccattc
tctcctaatcaagaagttatggaacctgactgggaaatatatttgagagaaactgcaaat
gcaatagtatctgaacaaagtccgcagcgacttcttgaagttagacaacggatctatgag
ctgttaacaagatgcattccacctgaaattatcatgaagggtctctacaacgaactggct
aacaactgtgatggtactttgaaaacagagttgtcacaaattgctgctcagtatgaacat
caacttcgccttggcacaaaatcggtttatcatatagaggccttcattgcaaagttcatg
tgtatttataagaagttcctagaagatggtttggatgcgatgatattctga

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