Styela clava (leathery sea squirt): 120345606
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Entry
120345606 CDS
T07291
Name
(RefSeq) TATA-box-binding protein-like
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120345606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sclv03000
]
120345606
03021 Transcription machinery [BR:
sclv03021
]
120345606
Transcription factors [BR:
sclv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
120345606
Transcription machinery [BR:
sclv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120345606
RNA polymerase III system
TFIIIB
120345606
RNA polymerase I system
SL1/TIF-1B
120345606
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
120345606
NCBI-ProteinID:
XP_039271061
LinkDB
All DBs
Position
Unknown
AA seq
414 aa
AA seq
DB search
MDDLAGPSFFDYTGAHSTISSSTLEIHGAGLDSVLKQETHDSTAWIQGFTDLSSEIGITQ
QHTSYEQTTSKVNFFQSGLQNPIGLESLISGPPSQTFDSLDLILNEPSSFDNNTSSSIPT
SIFSTSVENNNISKVEPITSDSLILNSLNALPTHNSMQQSTHNATIENSESQGPLIPLEK
AGNVPNLTVTTVKEIPATVIPKEVDPEKDLNLYITNVVTSFRVRCHLNLRRIAQEGINVI
YQRESKKIIMRIRRPSCTAYIWSSGKIICTGANSEMAARKGSRKLAKRLQKIGFQVIFSN
FKVINVLAVCKMPYHINIVDFSNFHRSKHLSYEPEIHPAVTYRMPDMKVTFKIFSTGSIT
LTCPVVARISEAIKLIYPMVEGFFKKDKPNDLASLRKQPDDFEKVEDKDEQSLS
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggatgatctggctgggccttcatttttcgattatactggtgctcattcaaccatatcc
tcctcaactcttgaaatccatggtgctggactggactcagtattaaaacaggaaacgcac
gactctaccgcatggatacaaggattcacagacttgtcatcagaaattgggataacgcaa
caacataccagctatgaacaaacaactagcaaagttaatttttttcagtcgggattacaa
aaccctatcggactggaaagtcttatttcaggcccgccatcgcagacgtttgactctctg
gatttgattttaaatgaacctagcagtttcgataataatacttccagctcaattccaacc
tcaattttttcaacctccgttgagaataataatatcagtaaagtggagcctattacatca
gactccttgattttaaattcactgaatgcattacctacccataattcaatgcaacaaagt
acccacaatgcaacaatagagaattcagaaagtcaggggcctctaattccattggaaaaa
gcaggaaatgtcccaaatctaactgtcaccactgtgaaagaaatcccggcaacggtcatt
cctaaggaagtggaccctgagaaagatctgaatttatacataacgaacgttgtgacatcg
ttccgagtaagatgtcatcttaatttacgaagaatcgcacaggagggaatcaatgttatt
tatcaaagagaatcaaagaaaattatcatgcgaatacgacggccgtcttgcacagcttat
atttggtcttctggtaagattatttgcacaggagcaaactctgaaatggctgctagaaaa
ggttcaaggaaactcgcaaaaaggctgcagaaaataggatttcaagtgatattttcaaat
ttcaaagtgatcaacgttcttgctgtttgtaaaatgccgtaccatattaatattgttgat
ttttctaattttcatcgatcaaaacatttgagttatgagcctgagattcatcctgcagtg
acttataggatgccagatatgaaagttaccttcaaaatattttctaccggttcgatcact
ctgacctgccctgttgtcgctcgaatatccgaagcaattaaactaatttatccaatggtg
gaaggttttttcaaaaaggacaagccaaacgatcttgcctcactaagaaaacaacccgac
gattttgaaaaagttgaagataaagatgaacaaagtttgagttga
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