Styela clava (leathery sea squirt): 120346160
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Entry
120346160 CDS
T07291
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120346160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120346160
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
120346160
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
120346160
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
120346160
NCBI-ProteinID:
XP_039271762
LinkDB
All DBs
Position
Unknown
AA seq
289 aa
AA seq
DB search
MAIAILGDAEKRFIIHGIQEDLRNDGRGCEDYRHIDLEVNLVSNTNGSSRLRIGNTELLV
GVKLDLEMPLANSPDQGLVDFNIDCSPNATPQFQGRGGEDLAATIKSLLTRAYNNNLVLD
LKSLCIVPGKNCWSVHVDVLILECGGNLLDAVSIAVFAALFDTSIPKLGVTEGDEGEVEI
NLPDDPLDSIPMNVTNCPVFVTLSKAGQRYIIDATAEEEACCLASVILSIMKDGRCTALR
KDGSGSLDPQSISEMLDVGKRVGINLHKCILKFLKNMPAVKFNDKTGFL
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atggcaattgcaatactcggtgatgcagaaaagcgctttataattcatggaatacaagag
gatttgcggaatgatggacgaggttgtgaagattacagacacattgatttggaagtaaat
cttgtttctaacacgaatggatctagcagactgagaattgggaatacagaacttcttgtc
ggcgtgaaacttgatctcgaaatgccactggcaaattctcctgaccaaggattggtggac
tttaacattgactgctccccaaatgccacaccacagttccaaggtaggggcggtgaagat
cttgccgcaaccataaaaagtttactaacaagagcctataacaataatcttgtgttagac
ctcaaaagtttatgtattgtgcctgggaaaaactgctggtcagtgcatgttgacgttctc
atattggaatgtggcggcaatcttcttgatgcagtgtcgatcgcagtattcgctgctttg
tttgacacatccatcccaaaactgggagtgactgaaggtgatgagggggaggtggaaatt
aacttgccagatgatccattggacagtatccccatgaatgtgactaattgtccagttttt
gtaactttgtcaaaagctggtcagagatatattatcgacgccacagccgaggaggaagca
tgttgtttggcaagtgtcattttatcaattatgaaagatggccgctgtacagctctgcgt
aaagacggctctggtagcctggacccacagagtattagcgaaatgctagatgtgggaaag
agagtaggaataaatttgcataaatgtattttgaagtttcttaaaaacatgccagctgtg
aaatttaatgacaaaactggtttcctttga
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