Styela clava (leathery sea squirt): 120346286
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Entry
120346286 CDS
T07291
Name
(RefSeq) collagen alpha-1(XXII) chain-like
KO
K16630
collagen type XXII alpha
Organism
sclv
Styela clava (leathery sea squirt)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Sec23_trunk
Motif
Other DBs
NCBI-GeneID:
120346286
NCBI-ProteinID:
XP_039271924
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MACYRLLILGVICISFSSAEIEQNAQLTVSQLTQPNSTIQATFNIEPLAKVAQNTSTQVD
VKTESFAAEKKLTKFQKNKLARRLAREKKRKEKAQKVSPSRVKKINQRKVLNLSDPRVAP
TKKNSDCTTKKCGANKKKFIKKAKNKKALRRKHEDGTNEHPAEGNTELEIPANIIEVMQD
TSLNRFSQQENERNVRRILQNSNCYNQPADIMFVIDTSYDMVSIDFEKILNFVRESLSNL
PISSAETRVGIATFDVFVNVMISFKNYSDKKLLLDAISRIASDNKTQDLQGEDYFDAAIE
IFSEENGARQLFSGTQHIMVMITNDGSMMSERIANVLSQDGVEKYLIVIGEGIYTQEIQH
LVSEPVMSHAYVTPNFDELQKINLDLTKQLCNEEICSNGNIIDGGITGFDLLGLMNIDEN
DKVTKSNGSYENATAYSVDHEVDLRINPVSLILPLGIPRYYSIIATIKMNEQASHNDWSL
FEVHNTRGEVMEAVKISGHNRSVEYITMNDNMETVSVVFADAQKLFGKGFHKLTLLVTPD
GVMLYIDCEVVEIITFNSSLGRPLADGEISIAKMGTFDPEIQVNLQQLDLICDVDINMSE
RFSCDRIGLKKDIPRTNLLLEVETSQKHHTSSETLIRGRFNTQNLAGEFQQSDNQTFQRQ
SHSTFTLRKTDGKDGDINGDDKFEITQSNKTDETTHNNMKVTQEQIPEEPGQVIDNDFYY
QRPSPGPLTDNTTYCECPPPEYIPGPKGERGPKGEPGNDGLKGDIGPPGFPGPVGIAGRM
GPPGVSGKRGLKGDKGPKGNYGPKGPDGSIGFKGAKGEPCNAELGNLVDRVKGTKGEKGN
RGLPGLPGLIGDAGKPSYRMGMKGHRGDPGQRGPKGVSGPRGMRGYQGPEGKKGLAGPRG
EPGVPGIDGVKGEPGPTGPQGPMGDAGKAGPKGHRGRQGYPGNPGFPGLPGFKGHEGDKG
ERGQQGEVGKLGLPGVPGPQGENGKVGRPGEPGPEGLRGPTGPRGVKGDTGPIGNTGETG
KQGEKGDKGDKGEDGFPGEIGRPRDMDEIVAAITKVVAEMLPRYMITLQKECQRCMPKRA
FPGKPGPSGPPGQNGLQGLIGHPGKDGAPGRPGAQGPEGARGKPGPRGNKGDNGARGLAM
HGPMGPPGPQGPPGKPGEGITGMPGSPGARGDMGKRGKQGRQGAAGAPGICDASDCSGAP
EFRPDPIVDSPYSKGPPGPDNIRGPGETLGRLRLVPGLLMHLKGPGAPDRLNIGTFANGG
RLTRRSTRRP
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgttaccggttactgatattaggcgtaatttgcatatcattttcaagtgcagag
attgagcagaacgctcaacttacagtttctcagttaactcagccaaactcgactattcaa
gccactttcaatatagaacctttagcaaaggttgctcaaaacacaagtacgcaggtcgat
gtaaaaactgaatcatttgctgcggaaaagaaactgacgaaatttcagaaaaataaactt
gctagaaggctagctcgagagaaaaaaagaaaagaaaaggctcaaaaagtttctcccagt
cgcgttaagaaaatcaatcaaaggaaagttttaaatctttcagatccgagagtcgcacct
acaaaaaagaattctgactgtacgacaaagaaatgtggtgcaaataaaaaaaaatttatc
aaaaaagcaaaaaacaagaaagctttgaggagaaagcatgaagatggaacaaatgaacac
ccagcagagggcaatactgaattagaaatcccagcaaatattattgaagtcatgcaagac
acatccctgaatcgattttcacaacaagaaaatgaaagaaacgtcagaagaattctgcaa
aacagtaattgctacaatcaaccagcagatataatgtttgttatcgatacatcttacgac
atggtatcaatagattttgaaaaaatactgaattttgtcagagaatctttatcaaatctc
ccaatttcttcagccgagacaagggtcggaatcgctacatttgatgtatttgtaaacgta
atgatcagttttaaaaattattcagacaaaaaactgctcctggatgccatctcgaggatc
gcatctgacaacaaaacacaggacttacaaggcgaagactattttgacgctgccatcgaa
atattctcagaggaaaacggagccagacaattgttttctggaacacaacatataatggtt
atgataacgaacgatggaagcatgatgtcggaacgtattgctaatgttttatcccaggat
ggcgttgaaaagtacttaatagtgattggcgaaggaatctatacgcaagaaattcagcat
ctagtttctgaacccgtgatgtcacatgcatacgtcactccaaactttgacgaactacaa
aaaatcaatttagatctgaccaagcaactttgcaatgaagaaatttgcagcaacggtaac
attatcgatggtggaattacaggattcgatcttcttggattgatgaacattgatgagaac
gataaagtgacaaaatcgaatggaagttatgagaatgctacagcatatagcgttgatcat
gaagtagatctaaggattaacccagtcagtttaattctaccgctcgggatcccacgttac
tactccattattgccacaataaaaatgaacgaacaagcatctcacaacgactggtcatta
tttgaggttcataacaccagaggagaagtgatggaagcggtgaaaatatcgggacataac
agaagtgttgagtacatcactatgaacgataatatggagacagtgtctgtagtttttgca
gatgcccagaagctttttggaaaagggtttcacaagctgactttactcgtaacaccagat
ggggtgatgttgtacatcgactgtgaagtggtcgaaattattacattcaattcttctctc
ggtcgaccactagcggatggcgaaatcagtatcgctaaaatgggtacctttgatccagaa
atacaagtcaacctgcagcaattggatctaatttgtgatgtcgatatcaacatgagtgaa
aggttttcgtgtgacagaatcggactaaagaaagatattccgcgaacaaaccttttgctt
gaagtcgaaacctcacaaaagcatcacacatcatcagaaactctgataagaggccgattc
aacacacaaaatcttgctggagaatttcaacaaagcgacaaccagacttttcagcgtcaa
agtcattcaaccttcacgcttagaaaaactgatggtaaagatggagacatcaatggagat
gataagtttgaaatcacgcaatcaaataaaacagatgaaacaacccacaacaatatgaaa
gtaacgcaagaacaaatacctgaggaacctggacaagttattgataatgatttctattat
cagagaccttctcctggacctttaacagataatacaacctattgcgaatgcccgcctcct
gaatacatcccaggacctaagggagagcgaggaccaaagggagaaccaggaaatgacggt
ttgaagggtgacattggaccaccaggatttccaggcccagtaggaattgcgggacgaatg
ggcccacctggcgtatcagggaaaaggggactgaagggagataaaggaccaaagggtaac
tatggacccaaaggaccagatggcagcattggatttaaaggtgctaaaggtgaaccatgc
aacgctgaactaggtaatctagtcgatcgagtgaaaggaaccaaaggtgaaaaaggaaac
agaggacttccgggattgccaggattgataggagacgccggaaaaccaagttacagaatg
ggtatgaaaggacacagaggtgacccaggacagcggggacctaagggtgtcagtggaccc
agaggtatgagaggttaccaaggaccagaagggaagaaaggactagccggtccaagagga
gagccaggtgtgccaggaatagacggtgtaaagggtgaaccaggaccgacaggaccacaa
ggcccaatgggagatgctggaaaggcgggacctaaaggacacagaggcagacaagggtac
ccaggaaatccaggattcccaggtcttccaggtttcaagggtcatgaaggagacaagggc
gaaagaggtcaacagggcgaagttggaaaacttggtctaccgggagtaccaggtccgcaa
ggagaaaatggcaaagttggacggccaggagagcctggaccagaaggtcttcggggcccc
acaggtcccagaggagtcaaaggagatactgggccaatcggaaacactggagagactggg
aaacagggcgaaaaaggtgacaaaggagataagggagaagatggattccccggagaaatt
ggtaggccacgagatatggacgaaattgttgcggcaatcacaaaagtcgttgcggaaatg
ttgcccagatacatgatcacattacaaaaagaatgtcaacgatgcatgccaaagagagcg
ttcccaggtaaaccaggaccatcaggtcctccagggcaaaacgggctacaaggtctaatt
ggacacccaggcaaggatggtgctcctggtcgaccgggggcacaaggacctgaaggcgcg
cgtggaaaaccaggtccaaggggaaacaagggagataatggcgcaagagggctagctatg
catggaccaatgggaccacccggacctcaaggtccaccaggcaaaccaggtgaaggaata
acaggtatgccaggtagtccaggagcccgtggggatatgggtaaaagaggtaaacaagga
cgacaaggcgctgctggcgccccaggaatttgtgacgcaagcgattgcagtggagctcct
gaatttagacctgatcctattgtggattctccgtatagcaaaggaccgccaggaccagat
aatatcagaggaccaggtgaaacacttggaagactaagattagttcctggcttactcatg
catttgaaaggaccaggtgctcccgaccgattgaatataggaacgtttgcaaacggaggc
cgcctaactcgaagatccacaagaagaccttga
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