Styela clava (leathery sea squirt): 120346345
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Entry
120346345 CDS
T07291
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03440
Homologous recombination
sclv03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
120346345
03460 Fanconi anemia pathway
120346345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120346345
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120346345
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
120346345
FA (Fanconi anemia) pathway
Downstream FA components
120346345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
Motif
Other DBs
NCBI-GeneID:
120346345
NCBI-ProteinID:
XP_039271990
LinkDB
All DBs
Position
Unknown
AA seq
1265 aa
AA seq
DB search
MEDTKFSATSAVSLKIGGITVKFPAQPYPSQLSMMSMIIKGLEKRQHCLLESPTGSGKSL
ALLCSALAWQQTQYEKSENEFLSKLTSDVENQNPICTCDELNGKSKPESSVGTSSSNYFN
ATTGSDVIDLCTPENDDCDDDFKKKVKAKSKAKTILCPACRELKEKSKCCQSEEKEIDDT
DFKKPRVPKIWFGTRTHKQIAQITKELGRTSYDSTNMTILSSRQHSCIHPAVMKSSNKNE
ECRDLRMGKHTLGAKCAFYQNVHRMKSHYQLGCAGLGAAWDLEDLVGLGKTIKACPYYSA
KELVSSSNIIFCPYNYLIDPMIRSQMQINLKNQIIILDEAHNIEDSAREAGSFTMTEAAL
ANTTTDLDCLMNEGIKVDDHRPLHLLCTRLGQWITEHARNLSPSDYETATQVWYGRDIIR
HLNDWGITQDTLPLLEGNFAVATDLGEEDIETAKILHSSSQATLGGLFNVLRYLMTQEHK
YCDDYRITIIRQMVFGPVPPKRTRDGWVTLNKRSKKHSVTNLHFWCLNPAVAFNDFSGAH
SIILTSGTLSPMSSFSSELGLSFPIQLEANHVIKDSQVWVGSIGRGPKGIQLEATYKNTD
KFEFQDELGNLICSVCRAVPHGVLCFVSSYNMLKKLQERWQTTRLWDRIEETKQIVCEPR
SSSKDEFDSLLQSFYDAVKKSEEENQFGGALLIAVCRGKVSEGLDFADNNARAVITVGIP
FPSIKDKQVELKRKYNDMHKNHRGLLAGSQWYEIQAFRAMNQALGRCIRHKTDWGALIIV
DDRFCKNPKKYSKGLSKWVRQKMIPYTSFDNAMSNITAFVQRQMSGTSNVSLPTVNVNSS
PPITSSSTARSILSSIHESLHVEKVEPESMDVSLNRSIDKSSTKKKKKPTKQKVVTKTTE
NILHHENDEIDSSPNDDFQNESFDKFNRTSVRKKTKAKPPSKMNCSKIMENNSSDGTTNR
KINENEISGLETLANIKPTNNCEKFHQQIPVKRESKTNLSNSSKKTILKLSSDTTLPIPS
TLDVIDSLNDDVMVDDLFDCTIPATPEKMNITVIPESPPSANGDSIHIGFQRALDFDSGI
SSARKRKLTQSHTGISTPNSKRTDKEDFDTLSNCEQNSGDLLSRATRKQCLKKEKGTHIS
EKKSVLKCKACTVILYERVQQTIACERLQSSFINENFLGQKSIMCDVYSVESKQMDFEFI
TLIKEKSRDDSSIELNSIWCEEDHRCYQIYRCQCCMKPVAFRIVSEQQFRDKYFFISQLV
ERIDD
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggaggatacaaagttttcggcaacgtctgctgtgtcactcaaaatcggaggcattact
gttaaatttccagcacagccatatccttcacaactttctatgatgagtatgataataaaa
ggactagaaaaacgtcaacattgtcttttggaaagtccaactggaagtggaaaaagttta
gcattattgtgttcggctcttgcttggcagcagacacaatacgagaaatcagagaacgaa
ttcctttccaaattaacttcagatgttgaaaatcagaatcctatttgtacatgtgatgaa
ttgaatggtaaaagcaaaccagagtcatctgtcggcacatctagtagtaattatttcaat
gcaacgaccggtagtgacgtcatagatctctgcacacctgaaaatgatgactgtgatgat
gattttaaaaaaaaagttaaagctaaatcaaaggcgaagactattctttgtcctgcctgc
agggaattgaaggaaaaaagcaaatgctgtcaatcagaagaaaaagaaatcgatgacaca
gattttaaaaaacctcgagtacctaagatatggtttggtacaagaacacataaacaaatc
gctcaaattacaaaagaattgggaaggacatcttatgactctacaaacatgacgatatta
tcaagtcgtcagcattcttgtatccatcctgcagttatgaaatcatcgaataaaaatgaa
gaatgcagagacctgagaatgggaaagcatactctgggagcaaaatgtgcattttatcaa
aatgttcaccgaatgaaaagtcattaccagttgggttgtgcaggacttggtgctgcatgg
gaccttgaggatctagtgggacttggaaaaacaattaaggcttgtccttattacagtgct
aaagaacttgtttcatcgtcaaatattattttttgtccttataactacttgattgaccca
atgataagatctcagatgcagataaatctgaaaaatcaaataattattttggacgaagct
cacaatatagaagatagtgcaagggaagctgggagtttcacaatgacagaggctgcatta
gcaaacacaacaactgatttagattgtttgatgaatgaaggcataaaagttgatgatcat
aggccattgcaccttctttgtacaagattaggtcaatggataacagagcatgccaggaat
ctcagtccttcagattatgaaacagcgactcaagtttggtacggcagagatatcatcagg
catttgaacgattggggaatcactcaagatactctgcctttactcgaaggtaactttgca
gttgcaaccgatcttggagaggaagatatagaaacagctaaaatacttcattcatcaagt
caggctactcttggtggtctcttcaatgttttgagatacctgatgacacaagaacacaaa
tattgcgatgattacagaatcacaatcataagacagatggtgtttggtccagtcccgcct
aaacgaaccagagacggatgggtgactttgaataagagatcgaagaaacactctgttacg
aatctacatttctggtgtcttaatcctgcagtggccttcaatgatttcagtggagctcat
tcaatcattctaacatccggtactttatctccaatgtcatcattctcatctgaacttggt
ctttcgtttccgattcaactggaagcaaaccatgttatcaaagattcacaggtgtgggtt
gggtctattggcagagggccaaagggaatacaattggaagcaacttataaaaatacggat
aagttcgaatttcaagacgaacttgggaatcttatatgttctgtctgtcgagctgttcct
catggagttttgtgttttgtttcaagttacaacatgctgaagaaattacaagaacgttgg
cagaccaccagactctgggacagaatcgaagaaaccaaacagattgtttgtgaaccgaga
agtagcagcaaagatgagtttgattccttgttacaatcattctacgatgcagtgaagaaa
tcggaagaagagaatcagtttggtggtgctctgttgattgctgtatgtagaggaaaagtg
agtgaaggacttgattttgcagacaataatgccagagcagtgatcacagttggtattccg
tttccaagtataaaagataaacaagttgaattgaaaagaaaatacaatgatatgcacaag
aatcatcggggattgttagctggatctcagtggtatgaaatacaggctttcagggcaatg
aatcaagcactcggtcgttgtatcagacacaagacagactggggtgctctcatcattgtt
gatgatagattttgtaaaaatcctaaaaaatactccaagggtctgtcaaagtgggttagg
caaaagatgataccttacacatcttttgacaatgcaatgtcaaatatcacagcatttgta
cagagacagatgtcaggtacttctaatgtttcattaccgaccgtcaatgttaacagttca
ccccctattacatcttcttccactgcaagatccatcttgtcttcaattcatgaatcattg
catgttgaaaaagttgagcctgagtcaatggatgtatctctgaatagaagtatcgataaa
tcttctacaaaaaagaaaaagaagcctaccaagcaaaaagttgtgactaagactacagaa
aatattcttcatcatgagaacgatgaaatagattcaagtccaaatgatgatttccagaat
gagagttttgataagtttaatagaacttctgtaagaaaaaaaactaaagctaaaccacca
tctaagatgaattgttcaaaaattatggaaaataacagttcagatggaacaacgaatcgc
aaaattaatgaaaatgaaatttcaggacttgaaactttagccaatatcaaacctacaaac
aattgtgaaaaatttcaccaacaaattccagttaaacgggaatccaaaacaaacttgtca
aattcatccaaaaaaacgattttaaaactatcatctgacacaacacttccaatcccaagt
actctggatgtaattgattctttaaatgatgatgtaatggttgatgatttgtttgattgc
acaattcctgccaccccagaaaaaatgaacatcactgtcattcctgaatcaccaccatca
gccaatggagattcaattcacatcggatttcaacgagcattagattttgattctggaata
tcatcagcaagaaaaagaaaactgacgcaatctcatactgggatctcaacacctaattca
aagcggacagataaggaggattttgatacattatcaaattgtgagcagaattctggtgat
cttttatcacgtgctacaagaaaacagtgtttgaaaaaggagaaagggacgcacatttca
gaaaagaagtctgttctcaaatgcaaagcatgtacagtaatactttatgaacgtgttcaa
caaactattgcatgtgaaaggctacaatcatcatttatcaatgagaattttcttggacaa
aaatctatcatgtgtgatgtgtattcagtagaatcaaagcagatggattttgaattcatc
acattgatcaaagaaaagagtagagatgattcaagcattgaattgaattcaatctggtgc
gaagaagatcataggtgctatcaaatatatcgatgtcagtgttgtatgaaaccagttgct
tttcggatagtttcagaacaacagtttagagataaatattttttcataagtcaactggtg
gaaaggattgatgactga
DBGET
integrated database retrieval system
