Styela clava (leathery sea squirt): 120346523
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Entry
120346523 CDS
T07291
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
sclv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120346523
03015 mRNA surveillance pathway
120346523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120346523
Enzymes [BR:
sclv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120346523
5.6.2.5 RNA 5'-3' helicase
120346523
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120346523
mRNA cycle factors
Common to processing body (P body) and stress granule
120346523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
UvrD-helicase
DEAD
NPHP3_N
SLFN-g3_helicase
ATPase
nSTAND3
AAA_16
Helicase_RecD
AAA_22
PhoH
SRP54
Motif
Other DBs
NCBI-GeneID:
120346523
NCBI-ProteinID:
XP_039272224
LinkDB
All DBs
Position
Unknown
AA seq
788 aa
AA seq
DB search
MMKSGDGEDIGGLQEHIHVATQGVADLRFEEEDEEDTYYTKDLPEHACRYCGIHDPNCVV
MCNTTKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHRDGQLGDSVLECYNCGCRNVFLLG
FIPAKADSVVVLLCRQPCANQSSLKDMNWDASQWQPLIQDRCFLSWLVKIPSDEEQMRAR
QITAQQINKLEELWKENSDATLEDLEKPGVDEEPQAVLLRYEDAYQYQNIFGPLVKLEAD
YDRRLKESQTQGNITVRWDVGLNKKRLAYFQLPKTDSDMKLMQGDEISLRHMGSNWEGKG
HVVKVPDNFGDEIGMELRSAASAPLENTRGFQVDFVWKSTSFDRMQSSMKTFAVDEASVS
AYIYHRLLGHEVDEQTLKINLPKRFSAPGLPELNHSQVYAVKTVLQRPLCLIQGPPGTGK
TVTSATIVYHLVKSCNQGQVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDSNVS
FLSLHNQVRSMDSLPELQKLQQLKDETGELSSNDEKRYRALKRNAERELLQNADVICCTC
VGAGDPRLVKFRFRSILIDESTQATEPECMVPVVLGPSQLILVGDHCQLGPVVMCKKAAN
AGLAQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGKTFIDIDFS
WPSPDKPMFFYKTSGQEEIASSGTSYLNRTEAVVVERITTKFLKSGIKPEQIGIITPYEG
QRSYLVQYMQYSGSLHSKLYMEVEVASVDAFQGREKDFILSCVRANEHQGIGFLNDPRRL
NVALTRAR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaagtggggatggtgaagatattggtggattacaagaacatattcatgttgcc
acccagggggttgctgatctgagatttgaggaagaagatgaagaagatacttattatact
aaggatcttcccgaacatgcttgcaggtattgtggaattcatgatcctaactgtgttgtg
atgtgtaatacaacaaagaaatggttttgcaatggccgtggaaatacttcaggaagtcat
attgtgaatcatctggtgagagccaaatgcaaggaggtcactcttcatcgtgatggtcag
ctcggtgattctgtgttggaatgttataattgtggatgtcgcaatgtgtttcttcttgga
ttcatacctgccaaagcagattctgttgttgttcttttgtgcaggcaaccatgtgcgaat
cagagtagcctgaaagatatgaattgggatgcatctcagtggcaacctttgattcaagat
cgttgttttttgtcttggctggtcaaaattccttctgatgaggaacagatgagagcaaga
caaatcactgctcagcagatcaataaattggaagaattatggaaggaaaattctgatgca
acactcgaagatttagaaaaaccaggagtggatgaggagccacaagctgttttattgaga
tatgaagatgcctaccagtatcaaaatatctttgggcctctcgtcaaattggaagctgat
tacgatcgcagactgaaagaatctcaaacgcaaggaaacatcaccgttagatgggatgtt
ggcttaaacaagaaacgtcttgcttattttcagttgccaaagactgacagtgacatgaag
ctgatgcaaggagatgaaataagcttgagacatatgggttcgaactgggaaggcaaagga
catgttgtaaaagtaccagataattttggtgatgagattggaatggaattgagatctgct
gcgagtgcaccactagagaataccagaggatttcaagttgattttgtttggaaatctact
tcttttgataggatgcagagttccatgaaaaccttcgctgtggatgaagcatctgtttca
gcttacatttatcatcgattgctaggacatgaagtagatgaacaaacattgaaaattaat
cttcccaaacgtttctctgcacctggtctacctgagctgaatcattctcaggtgtatgct
gtcaaaactgttctgcaacgtccgctctgtctgatccaaggaccacctggtactgggaaa
acagtgacgagtgctaccatcgtctatcatcttgtgaaaagctgtaaccaggggcaagtt
cttgtttgcgctccgagcaacattgctgttgaccaactgactgagaagattcacagaact
gggttgaaggttgtgcgtctttgtgcaaaaagtcgtgaagctattgattctaacgtttca
ttcttgtctctgcataatcaagtcagaagcatggatagcttgcctgaactgcaaaagctt
cagcagctgaaagacgaaactggtgaattgtcttctaatgatgagaaaagatatcgagca
ttgaaacgcaatgcagaacgtgaattactccagaatgcggatgttatatgttgtacttgt
gttggagctggcgatcctcgtcttgtgaagtttcgtttcagatctatattgattgatgaa
agcactcaagcaactgaacctgagtgtatggtacctgttgttcttgggccaagtcagctc
atcttagttggtgatcattgtcagttgggacctgttgtcatgtgtaagaaagcagcaaat
gcaggattggctcaatctcttttcgagagattggttgtacttggcattagacctataaga
ttgcaggtacaatacagaatgcatccagctctctctgctttcccatccaacatcttttat
gaaggttctctccagaatggtgtcactgctggtaagacattcattgacattgatttttct
tggccttctcctgacaaaccaatgttcttctataagacttcaggacaagaagaaattgca
agctctggaacatcctacttgaacagaaccgaagctgtcgttgtagaacggatcacaacc
aagttcttaaaatctggaatcaagcctgaacagattggtataattactccatatgaaggg
caacgttcatatttggttcaatacatgcagtattctggatctctacattccaagttgtac
atggaagttgaagtggcaagtgttgatgcttttcaaggtcgcgagaaagattttattctt
tcctgtgtgagagccaatgaacatcagggaattggatttttgaatgatcctcgtcgtctc
aatgtagctttgacaagagccaggtaa
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