Styela clava (leathery sea squirt): 120347159
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Entry
120347159 CDS
T07291
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03420
Nucleotide excision repair
sclv04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120347159
09124 Replication and repair
03420 Nucleotide excision repair
120347159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sclv04121
]
120347159
03400 DNA repair and recombination proteins [BR:
sclv03400
]
120347159
Ubiquitin system [BR:
sclv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
120347159
DNA repair and recombination proteins [BR:
sclv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
120347159
TCR (transcription coupled repair) factors
Cul4-CSA complex
120347159
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
120347159
NCBI-ProteinID:
XP_039272966
LinkDB
All DBs
Position
Unknown
AA seq
1143 aa
AA seq
DB search
MSFNYVVTAHKPSAVHFCITGNFTSPDDMNLLIAKSTRLEIYTVTSEGLRPITEMNIYGR
IAVLKLFRPPGEPKDLLFVLTERYNASILEYCAGEQGCQVKTKASGLVTDPVGRPPETGI
LGFIDPTCKIIGLRLYEGVFKILPYDPNSKELRPFNVRMDELSVIDAQFLHGYNVPTVAI
IYHNTHGRHIKTYEINIRDKEVKLGSWQQENVDTEASIIIPVPAPLNGALVVGQESIMYH
SGDGMAKLIAPPMIKQNIVSCFARVDNCRYLLGDMAGRLFMLHVETEEKIDENVSVKDLH
IELMGEVNIPECLSYLDNGVVYIGSRLGDSQLIRLETTPTSGEGDSSSSYISILDTYTNL
GPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIQEHASIDLPGIKGLWPLRLF
SDSSKFDTLILSFVGHSRILRLSGEEIEESEFGGFDDEQQTFLCSNVLNDQVVQITEKGI
RLISRKMKKLVAEWSPPRGNISNATCNYSQIVVAVGSQLYHLEVGSSELILRSERVMPEE
VACLNVNPLVLNPTDETAKAQLCAVGLWNDNSVHLLAMPGLEEKHSQMLGGEIIPRSVLM
VKFEGIDYLLVTLGDGMLFYFTINEDLCGLGERKKVPLGTQPTELHTFLSGGSLNVFSCS
DRPTVIYSSNHKLVFSNVNLREVNYMCALDSEGYPDSLALANDNVLLIGKIDEIQKLHIR
TVPLYESPRRIAYQEKSQCFGVTTLRYDTIGLEASKPTTRLCASLQANSITKDTSTKYRQ
PSMDANMYGDDTEIGNLLIIDQHTFEVHHAHQFAPFEWPCSIISCNIGAESYFVVGTAFV
YPEEPEPKQGRILVFQVFDGKLSQISEKEVRGAVYTLSNFNEKIIASINGSVIVYQWTEE
KDLTVDCSHQGNIIALFLKTKGDFVLVGDLMRSLSVLSYKAIEGNLDEIAKDYKPNWMTA
VEIIDDDNFIGADNSFNLFVCQKDSSTANDDDTSKLIGTGSFHLGDMVNVFQHGTLVMQH
LGETSTPTQGSILFGTVHGSIGVITTFNTEIFHLLGEVQKKLEKLIKGVGKIDHSFWRSF
TNDRVTSDHKGFIDGDLIENFLDLPREKMDSVAQGIQIKEGGIMKDATADDIIKVIEELT
RLH
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaactatgtcgtcacagctcacaagccgagtgcagttcacttttgtataact
ggtaacttcacaagtcctgatgacatgaatttacttattgctaaaagcacacgtttggaa
atatatacagtcaccagtgaaggacttcgtccaattacagaaatgaatatttatggaaga
attgctgtgttgaagttgtttagacctccaggtgaaccaaaagatctattgttcgtacta
actgaacgatataatgcgtcgattttggaatattgcgccggtgaacaaggctgtcaagtc
aaaacaaaagcaagtggattggtaactgatcctgtaggtcggccacctgaaactggtata
cttggatttatagatccgacatgcaaaataattggtcttcgattgtatgaaggtgtcttt
aaaattttgccttatgatccaaacagcaaagaactgcgccctttcaatgttagaatggat
gaattgagtgtgattgatgcccaatttcttcatggatacaatgttccaaccgtggctatc
atataccacaatacacatgggcggcatattaaaacctatgaaatcaatatacgagacaag
gaagtgaaacttgggtcatggcaacaagaaaatgtagacacagaagcttctattattatc
cctgttcctgccccgttaaatggagctctggttgtggggcaggaatctataatgtatcat
agcggcgatggaatggctaaattaattgcacctccaatgatcaagcaaaatattgtatct
tgctttgctcgtgtggacaactgtcgttatcttcttggtgatatggctggaagacttttt
atgctccatgttgagactgaagagaaaatagacgaaaatgtttccgtcaaagatttgcat
atcgaattgatgggtgaagtgaacatacccgaatgcctttcttatcttgacaatggtgtg
gtttatattggatcaaggcttggagattctcagctaattcgtcttgaaacgactccaaca
agtggagaaggagattcatcatcctcttatatttcaatactcgatacttatacaaatttg
ggccctattgtcgacatgtgtgttgtagatctggagagacaaggtcaggggcaactagtt
acttgttctggggcatttaaggaaggatccctgagaatcattcgtaatggtattggaatc
caggagcatgcaagcattgacttgcctggtataaaaggactatggccgcttcgactgttc
tctgattcatctaagtttgacacactgattttgtcttttgtcggccattctagaattttg
cgtctcagtggtgaagaaatagaggaatctgaatttggtggttttgacgatgaacaacag
acatttttatgctcgaatgtcttgaatgatcaagttgtacaaataactgaaaaaggaatt
agattgatttcaaggaagatgaaaaagttggttgcagagtggtccccaccaaggggaaat
attagcaatgcaacatgtaattattcacagattgtcgttgcagttgggagtcaactttat
catttagaagtgggatcaagcgaattgattctgcgctccgagagggtgatgccagaagaa
gtcgcttgcttaaatgtcaatcctctggtgttgaatccaacagatgaaacagcaaaagct
caattatgtgccgttggtttgtggaatgataacagtgttcatcttcttgctatgcctgga
ttagaagaaaaacattcacaaatgttaggtggtgaaattatccctagatctgttttgatg
gttaaatttgaaggaattgactatcttcttgtcactctcggagatggcatgttgttttac
ttcacgattaatgaggatttgtgtggtttaggcgaacgaaagaaagtccctcttggtacc
cagcctacagagcttcacacttttctttctggcgggtcactcaatgtattttcatgttcc
gacaggccaacggtaatctacagttccaatcacaagcttgtgttttctaatgttaattta
cgtgaagttaattacatgtgtgctctagattctgaaggatatcctgacagtttagcactg
gctaatgataatgtcttactaattggaaaaattgatgaaatccagaaactgcatattcgc
actgtgccattgtatgaatctccaaggagaatagcataccaggaaaagagccagtgtttc
ggtgtgaccactcttcgctatgatactataggattggaagcttcaaaaccaacaacacga
ttatgtgcaagcttgcaggccaacagtatcacaaaagatacaagcacaaaatatcgtcag
ccaagcatggacgccaacatgtacggagatgatacagagattggtaacctgttgattatt
gatcaacatacattcgaggttcaccatgcacatcagtttgctccatttgagtggccttgc
agcataatatcttgcaatattggagcagaatcttattttgttgttggtactgctttcgta
tatccagaagagccagaacctaagcagggccgaattcttgtatttcaagtattcgatgga
aaattatctcaaatttctgagaaagaggtacgaggagccgtttatacattatcaaatttc
aatgaaaaaattattgcaagtattaatggttcagtcattgtgtatcaatggaccgaggaa
aaagatctaactgttgattgcagtcatcaaggtaacatcattgctctatttttaaaaaca
aaaggagactttgtacttgtaggcgaccttatgcgatcactgagcgttctttcatacaaa
gccatcgaaggtaatttagatgaaatagcaaaagattataagccaaactggatgactgca
gttgaaatcattgatgatgataacttcataggtgctgacaacagcttcaatctttttgtt
tgtcaaaaagatagttcaactgctaacgatgatgatacatcaaaactaattggaaccggc
tcatttcatcttggggatatggtaaatgtatttcaacatggaacactggtaatgcaacat
ctcggcgagacttcaactcccacgcaaggcagtatattgtttggaactgtacatggaagt
ataggcgtcattactacctttaacacagaaatattccatttactgggtgaagtccaaaaa
aaattggaaaaattaatcaaaggagtggggaagattgatcacagtttttggcgatcattt
accaatgacagagttacaagtgatcacaaaggctttatagatggggaccttatagaaaat
ttcttggatctgcctagggaaaagatggactctgtcgcgcaaggcatacaaataaaagaa
ggtggaataatgaaagatgcaacggcagatgatattatcaaagttattgaagaactaaca
aggctacattaa
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integrated database retrieval system
