KEGG   Styela clava (leathery sea squirt): 120347186
Entry
120347186         CDS       T07291                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4-like isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
sclv  Styela clava (leathery sea squirt)
Pathway
sclv03250  Viral life cycle - HIV-1
sclv03272  Virion - Hepatitis viruses
sclv04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:sclv00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    120347186
   03272 Virion - Hepatitis viruses
    120347186
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    120347186
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sclv04131]
    120347186
   03400 DNA repair and recombination proteins [BR:sclv03400]
    120347186
Membrane trafficking [BR:sclv04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    120347186
DNA repair and recombination proteins [BR:sclv03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    120347186
SSDB
Motif
Pfam: AAA Vps4_C AAA_lid_3 AAA_5 TIP49 RuvB_N AAA_16 AAA_33 RNA_helicase Sigma54_activat AAA_2 AAA_22 AAA_25 AAA_7 nSTAND3 AAA_14 Ndufs5 DUF815 NPHP3_N ABC_tran Parvo_NS1 AAA_28 IstB_IS21 AAA_11 AAA_18 AAA_24 Mg_chelatase bpMoxR
Other DBs
NCBI-GeneID: 120347186
NCBI-ProteinID: XP_039273008
LinkDB
Position
Unknown
AA seq 439 aa
MYELLRKEAPKSNINLPLLRSLSDECLARVKYIGEIDVDSTRAPVLEILKKSIQHVNDCL
NNNSEESWQNEDSKQKYLPNSMDFDQQTDSESTHKSYSYSNEQSNTSDGQLNTRMRAVED
TIIRNCNVTFDDVVGLVEAKRTLHEAIVMPTRFPQLFTGNRKPWRRILLYGPPGTGKSRL
AMAVAGQIKTSFYSVSSSDMLSCWFGESEKLIRDLFAHSRSRKETAVIFMDEIDGLCRRR
NSTEQEATRRIKTELLLQMDNIAQTHAGSNKEKNEDVIIICATNSPWEIDPAFLRRFQKR
IYIPLPDKSCRRSILELHCNKTECELTEAEWEILGENTEGFSGSDLANLANAALFEPIRD
LESATHFVETTDKKYRHCSVEEKNAIKCALSEIPSFLVLARKLEFRDFERCLVTNKATIS
RDDMENFERFTAKFGQLGR
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgtatgagttacttagaaaggaagctcctaaatccaacatcaatctccctcttcttcga
tcgctgtcagatgagtgtctggctcgtgtaaagtatattggcgaaattgatgttgattct
actcgagcaccagttctagaaatattgaaaaaatctattcaacatgtgaacgattgttta
aacaacaactcagaagaaagttggcaaaatgaagattcaaaacagaaatatcttccgaat
tcgatggatttcgatcaacaaacggactcggaatctactcacaaaagttactcatattct
aacgaacaatcaaataccagtgatggacagttaaatacaaggatgcgagctgtcgaagac
acaatcataaggaattgtaatgttacttttgatgacgtagttggtcttgtcgaagcaaaa
cggacgttacatgaagctattgtgatgccgactcgttttccacagctatttacgggtaat
agaaaaccatggcgtcgaatacttctctacgggcctccaggaactggcaaaagtcgcctt
gctatggctgttgcaggacaaattaagacatcattttattcagtgtcgagttcagacatg
ctgtcatgttggttcggagaaagtgaaaaattaattcgtgatctgtttgcacattctaga
tcccgaaaagaaaccgctgtcattttcatggacgagattgatggtttatgcagacgtcga
aattctaccgagcaagaagcaactcgaagaattaaaacagaacttttattgcaaatggat
aatatagctcaaactcatgcgggatctaacaaggaaaagaatgaagatgtaatcattatt
tgcgctactaattcgccatgggaaatagatccggcttttctcaggcgatttcagaaacga
atctacattcctctcccggacaaatcctgtcgaagatcaattttggaattgcattgcaat
aaaactgaatgcgaactgaccgaagcagaatgggagattttaggtgaaaacacagaaggg
tttagtggaagtgatctcgccaaccttgctaatgcagctttgttcgagccaatcagagat
cttgaaagtgccacccattttgtcgagaccacggataaaaagtataggcattgttctgta
gaagaaaaaaacgcaatcaagtgtgccttgtcagaaatcccaagtttcctggttttggcg
cgcaaattagaatttagagatttcgaaagatgtctcgtcactaataaagctaccatttct
cgcgacgacatggaaaattttgagagatttactgcaaaatttggccaacttggacggtaa

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