Styela clava (leathery sea squirt): 120348141
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Entry
120348141 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoprotein TPR-like
KO
K09291
nucleoprotein TPR
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120348141
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sclv03019
]
120348141
Messenger RNA biogenesis [BR:
sclv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120348141
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR
TPR_MLP1_2
Nucleoprot-TPR
ERM_helical
GAS
Rod_CreS
Motif
Other DBs
NCBI-GeneID:
120348141
NCBI-ProteinID:
XP_039274205
LinkDB
All DBs
Position
Unknown
AA seq
2319 aa
AA seq
DB search
MADILVRIFNPDEVLQLPETVRKKLENELQFKENSIDSLKAEVDQMKAEHEQKYYEIEKN
MIEMSTRLNSASSNCSQATGRNKELDEELKSFKSLNESLETSFAEAQGEIAALKHTHDLW
KAEKMTLQHSIEKRDLEITEIRGEWKAVSDKLAVTTLSKNKIELKLDELQNSGVTIQYNT
KRLEKEKELLAIQNNQLTEELKAKSTELNSVKLQKENELVSLRSRLEVKMDECKQLATVS
ENLRTTNEELGKKIDDLLTKANTAEEEHRSMEEAYRNELQSQTNLAELYKASAKDEEEKA
NELASAVHELQKIVTKSADEKVANVLKLEELKKKSNDLSYQIELLKGELEKANDLLAVKR
GQDPEKLSDEELAALCPTAAMASKFIKSGMTLTEIYSKYIDTVDELEIAKQECKKSNETM
DAILEELNEKAPILKQQREDYERALSTITQLTSQTDAAVIECQHLRAEADDSARKLACME
REKKRLQVETGDLSTQIRFLLKELEESRGHNISMDQSMDETDVTSASDVISEHLLTFRSI
KELQEQNQRLLKVVRELSAESEASEKETENKELKELKDSLQQANEELENLREERQKQIEF
VEAIVRQRDMYRVLLAQEPKTGVPLSILASPSQATSTKQISIRDSVDRTPDSQDKTDSSS
KALQVLKSEFDEYKKDVQDNNKVINEQADRLRSQISELRTDNTKLQANVNFSAEKYELLK
KTFDNLRKESEMYREKNSKLSMLIQKQELNINKITNDLNCSQEEKENLKSKVENLLSEME
ILRRAEERLRSENNSLQREQQGQGVLLANIQKIQQSMEKQEFEVRSELRSRLESQERELK
NLRRTSNDTIQQKQTIIQMTEKQLLTTQRNLEKQQHINDTISATLRNVKSELESSKLEND
SNIAKVANLEQKLARLAGEKGGNVTLLGTSDDDAIENLKDMKAKCASLENEISSLNLKLE
KAQRAVQQHKEFAAATEESLKQANAANRELSEALETRLKNASEHQTTLEQKITTLEDENR
QLNSKKTSLISEVDLRTADLNRQMATLQSDLDHALKREKDLQKSEQEARNQFTEQMNLIH
DAQDKYQREMLLHAESVKELMQLKEKSETNSSDIEKAKISAKQAQHLLDSNKGMWEKQKK
KLTDEIDEMKERNKDLTDQLSALHTQLETMSNQMVALQHKSATSSPAAKYSRLSTQQQAK
SVAEDPTDKSNEQLMDIIKFLRKEKNLSEVKCSLAQSENTRMKQQLSHLQKQADEFKKSL
HTERQKSQSTLAELSEHEALMKKVETLNVLTDSNRMLREEKDRIQEELKTTKAALIELKQ
KFRPIQQENNLFSTQITTLKSEKVILEQDVQRWQQRSQQLIQSPRRQDPEEYRKLIAEQQ
KLQKNVENLNKEVTDKKLEVSTLQGKIRELNQQTESLKNQNVNLTKKLETSETEIKAKQS
ESEEKNKTIMQIRRVGRRYKTQYEELQKKQKEMEEKQKSTEENRVQDTSTSEATLAEINA
KLSALEASLLKITKEKEDTQKQLDMKTAEVEALKSQLQHANQKIAEESKSGNNSELAVEN
QKLMSERDEMKKQLQEKDDKSKRLLSKAKTRIEQIIKDKDEIAAVRDRLQSEETKMKEEL
EKLKQEVKTETDLKTELQNKVDDLQKQLTNATSQQQQQNKVTSVVGHQIHHYPGTSGMVE
PRKAANIRPISTQRVSQVSPMRVTRTARVMPEPQQEAQEGSSTDSVPTRSSPHAQVAPSS
SHLPASSMSSGTSTSMPTRAFVHPINPSAGRHQHVVSSMPTSSATHQIPTRSDATPLEQA
VVRGNTSSTTDGQSKEVSVSSVVAMSSTNVDISESDQAIVSSSDDQPAQSEDGAQPSVPS
SSCQSQTSSTTTVSESDSAPSQSSNASSSVNSSVAVSSIPVLIGRQALHPSHKRSYEDAD
ESTSAMDDSPGSSSDAQVSMAPVSKRQRSSPDQSSSAVHPITSQTASRSFGESSTRIQQA
ESSVAQVEVKSSTEVEAQVSSHLEDAEVRNEEDGVDTSSFTPIAVADDIQSTEVQPMPSS
SSAEVIDLTSDESGDDLNVEQDQVEMYVVEDGEIIADAEGDGGQQEANNQVPTNSARPIL
VLQPTPPDLLRNRTPMRPAPLTPGLTAPSADDGDGIVPCTPTLPTRRHDDNYQTINSPHV
PPGGPPIRFRFEDVSVPSQSVQPQTGIGTVDNTIMDFSGAGDEARSVPTTPIATITTVTH
TFIESSQVPQSEVSAVSSSIMEDQEEIVDVDKDDEGDLMVPISSSVPEETGNVDNSSVSE
SRELASSNLQNIRGRRIRLIGARSRGRGGGASPSTSQQP
NT seq
6960 nt
NT seq
+upstream
nt +downstream
nt
atggctgatatattggtgagaatattcaatccagatgaagtcttgcaattgccagaaaca
gttcgaaaaaagttggaaaatgaattgcaatttaaagaaaactctatcgattcgctaaaa
gctgaagtagatcaaatgaaagctgaacatgaacagaaatattatgaaattgaaaaaaat
atgattgaaatgtcgacgcgtcttaacagtgcttcttcaaattgttcgcaggctacagga
agaaataaagaactcgatgaagagctgaaatccttcaaatcattgaatgaatcgttggaa
acttctttcgctgaagcgcagggtgaaatcgcagcgctcaagcacacccacgatctatgg
aaagcagaaaaaatgactttgcaacattctatagaaaaaagagatttggaaattactgaa
ataagaggagaatggaaagcggtttctgataaactagctgtcactactcttagcaagaac
aaaatagagttaaaattagatgaactacaaaattctggtgtaacaattcagtataatacc
aaacgtttggagaaagaaaaagaacttttggcgatacaaaataatcaactgacagaagaa
ttgaaggcaaaatcaactgaattaaattctgtaaaacttcagaaagaaaatgaattagtg
tcattacgaagtcgtcttgaggtgaaaatggatgaatgcaaacaacttgcaactgtgtct
gaaaatcttcggacaacaaatgaagaattgggaaagaaaattgatgatttgttaacgaag
gccaacaccgcggaagaggagcatcgatcaatggaagaggcttatcggaatgaattgcaa
tcacaaaccaatttggctgagttatataaagcttcggcaaaagatgaagaagaaaaagcg
aatgaactggcttcagcggtgcatgaacttcaaaaaatagttaccaaatcagcggatgaa
aaagtggcaaatgtactaaaacttgaagaactgaaaaaaaaatcgaacgatctttcctat
caaatcgagctcttaaaaggtgaattagagaaagcaaatgatctacttgcagtaaaaagg
gggcaagatccagagaaactcagtgatgaagagttagctgcactttgccctacagctgca
atggcaagcaaatttattaaatctggcatgacgttaacagaaatttattcaaaatacatc
gacacagtagatgaacttgagattgcaaaacaagaatgtaaaaaatcgaatgaaacaatg
gatgccattttggaagaattaaacgaaaaagctccgattttgaaacagcaaagggaagat
tatgagagagcgctttccacgattactcaactcacttcgcaaactgacgctgcagtcatt
gagtgtcaacatcttcgcgcagaggcagacgattctgccagaaaacttgcgtgtatggaa
cgtgaaaagaaaaggcttcaagttgaaacgggcgacctctcaacgcagattcgattccta
ctcaaagaacttgaagaaagcagaggacataacatcagtatggatcaaagtatggatgag
acggatgtaacaagcgcttctgatgttatctcagaacatcttcttactttccgtagcatc
aaagaattacaggaacaaaaccaaagattattgaaagttgttcgagaactgagtgcagag
agtgaagcgagtgaaaaagaaactgaaaacaaggaattgaaagaactgaaagattcttta
caacaagctaatgaagaacttgaaaatcttcgagaggaaagacaaaaacaaatagaattt
gtcgaggcgattgtaagacaacgtgatatgtacagagttcttctggcacaagaacccaaa
actggcgttccactttcgattttagcaagtccatctcaagctacctcaactaagcagata
tcaataagagatagtgttgatcgtacacccgattcgcaagataaaactgactcgtcatcg
aaggcattacaggttctcaaaagtgagttcgatgaatataaaaaagatgtacaggataat
aacaaagtgataaatgagcaagctgataggctgcgatcacagatttctgaattacgtacg
gataatacaaaactgcaggcaaatgtcaacttttctgctgaaaagtatgaattgctgaaa
aagacctttgataatttgaggaaagaatcggaaatgtacagagaaaaaaattcaaaactt
tcaatgctaattcaaaagcaagaactgaatatcaacaaaattacaaacgatttaaattgt
tctcaagaagaaaaagaaaacttgaaatccaaagtagaaaacttgctttctgagatggaa
attttacgtcgtgcggaagaacgcttgaggtctgaaaataattctttacagagagaacag
caaggacaaggcgttcttttagctaatatacaaaagattcaacaaagcatggaaaaacag
gaatttgaagttcgctcagagctcagaagccgtcttgagtcacaggaacgcgagttgaag
aatttacgacgaacttcaaatgataccatacaacaaaaacaaactattatccagatgaca
gaaaaacaactcttaacgactcaacgaaacttagagaaacaacaacacatcaatgacaca
atttctgcaactttaagaaatgtgaaatctgaattggaatcaagtaaacttgagaatgat
agtaatatcgcgaaagtagcgaatctggaacagaaattagcacggcttgcgggtgagaag
gggggtaacgttactttactgggtactagcgatgatgacgctatcgaaaatttgaaagat
atgaaagccaaatgtgcttcacttgaaaacgaaatctcttctttaaatttgaagttagaa
aaagcgcaacgtgctgtccaacaacacaaagaatttgcggctgcgactgaggaatcgctc
aaacaagcaaatgctgcaaatcgtgaattatccgaggcactggaaacaaggctcaaaaat
gctagtgaacatcagaccacattagagcaaaaaatcaccacactcgaagacgagaataga
caactgaatagcaaaaagacaagcttaattagtgaggtcgacttacgtacagcagattta
aaccgacaaatggctacgctacaaagcgacttggatcatgcattaaagcgagagaaggat
ttgcaaaaaagtgaacaggaagctagaaatcagttcacagaacaaatgaatttaattcac
gacgctcaagataaatatcaaagagagatgttattacatgcggaaagtgtgaaagaactc
atgcaactaaaagaaaaatcggaaaccaacagttcggatatagagaaagctaaaatcagt
gcaaaacaagctcaacaccttcttgattcaaataaaggaatgtgggaaaaacagaaaaaa
aaacttacggatgaaattgatgaaatgaaagaaagaaataaagatttgactgaccagttg
tccgcactacatacccaacttgaaactatgagtaaccaaatggtagccttgcaacataag
agcgcaacctcttcgccagcagcaaaatatagcaggctttctactcaacaacaagcgaag
tctgtcgctgaagatcctactgataaatctaatgaacaactcatggatattatcaagttt
ctgagaaaagagaaaaatttatcggaagtaaaatgctcacttgctcaatctgaaaatacc
agaatgaaacagcaactctcgcatttacaaaaacaagctgatgaatttaagaaatcgtta
catactgaacgacaaaaatcgcaatcgacattagcggaactatcagaacatgaagcactc
atgaaaaaagttgaaacactaaatgtcttgacggatagcaatcgtatgctgcgcgaagaa
aaagatcgcattcaagaagaattgaaaactacaaaagctgctctaattgagctgaaacaa
aaattccgtcctatacagcaagaaaacaacttgttttctactcagatcacgacattaaaa
tctgaaaaggttatactcgagcaggatgtccaaaggtggcagcagagatcacaacaactt
attcagtcaccacggcgacaggatcctgaggaatacagaaaacttattgctgaacaacag
aaattacaaaaaaatgtggaaaatctgaacaaagaagtcactgataaaaaacttgaagtt
tcaacattgcaaggaaagatacgagaactcaatcaacaaacagaaagtttgaaaaaccag
aatgtgaatcttacaaaaaaactggaaacttcggagactgaaatcaaagccaaacaatct
gaatctgaagaaaagaacaaaacaatcatgcaaattcgaagagttggtagaagatataaa
actcagtatgaggaattacagaaaaaacagaaagaaatggaagaaaaacaaaaatccact
gaagaaaatcgtgtacaagacactagtacctcagaagcgactttagcagagatcaatgca
aaactttcagcgttggaagcgagtcttttgaaaataaccaaagaaaaagaggatacacag
aaacaactggacatgaaaacagctgaagttgaagcactgaaaagtcaacttcaacacgca
aatcaaaaaattgcagaagaatccaaatctgggaacaatagtgaacttgctgttgaaaat
cagaaattaatgagcgaaagagatgaaatgaaaaaacaacttcaagagaaagatgacaaa
tctaaaagacttttatcgaaagcaaaaacaagaatcgaacaaataataaaagataaagat
gaaattgccgctgtacgagaccgcttacaatcagaagaaaccaaaatgaaagaagaacta
gaaaaattgaaacaagaagtgaaaactgaaacagatttaaaaactgaactacaaaataaa
gtggacgatttacagaagcaactaacgaatgctacttctcaacaacaacagcaaaacaag
gttacgagtgtcgtgggacaccaaattcatcattatcctggtacaagtggtatggtagaa
cctaggaaagctgcaaatataagaccgatatctactcaacgtgtgagccaagtgtctccc
atgagagtgactcgtacagcgcgtgtgatgccagaaccacaacaagaggcacaagaaggc
tcgtccactgattctgttccaacaagaagttcacctcacgctcaagttgctccctcatct
agtcatcttcctgcatcaagcatgagttctggtacgtcaacatcgatgccgacccgtgct
ttcgtacatccgatcaatccatctgctggtcgtcatcaacacgttgttagctcaatgccg
acttcctcagctactcatcaaataccaacaagatctgacgcgacacccctagaacaggct
gttgttcgtggcaatacgagcagtacaactgatggtcaatcaaaagaagtttctgtttct
tctgtcgtagctatgtcttccacaaatgtcgatatttctgaaagtgaccaagcgattgtt
tcttcgtctgatgaccaaccagctcagtctgaggacggtgcacagccgtctgtgccctca
tccagctgtcaaagtcaaacttcatcgacaacaaccgtttcagaatcggattccgcacct
tcacaatcatcaaatgcaagcagcagcgtaaattcaagcgtagcagtatcaagcattcca
gttttaatcggccgacaggctctacatccatcacacaagcgttcatacgaagacgcagac
gaatcgacttcagctatggatgatagtcccggtagttcaagtgatgcacaagtgagcatg
gcaccggtttcaaagcgccaacgcagcagtcccgatcaatcaagctccgctgttcatcct
attacatcccaaactgcatcgcgatcatttggtgagagttctacaagaattcaacaagct
gagagtagtgttgctcaagttgaggttaaatcatctactgaggttgaagcccaagtgtca
tctcatttagaagacgcggaggtcagaaatgaggaagacggagtggatacttcctctttt
acaccaatagcggtagccgatgatatacagtctacagaagtccaaccaatgccgtcttct
tccagtgcggaggttatagacctgacaagcgacgaaagtggcgacgacttgaatgtggaa
caagaccaagtagaaatgtatgttgttgaagacggggaaataattgcggatgcagaagga
gatggtggtcagcaggaagcaaacaaccaagtaccaacaaattcagccagaccaattctc
gtactgcaaccgaccccacctgatcttctacgaaaccgcacccctatgcgacctgcaccc
ctaaccccgggtctcactgctccatctgcagacgatggtgacggtattgtcccgtgtact
cctacattacctactcgtcgtcatgacgataattaccaaacaatcaattcacctcatgtg
ccacccggtggaccacctattcggttccgatttgaggatgtatctgtgccttctcaatct
gtacaacctcaaacaggaatcggaactgtcgataacactataatggatttcagtggtgct
ggtgacgaggcgagaagcgttccaacaacacctattgctacaataacaacagttactcac
actttcattgagtcttctcaagttcctcaatctgaggtgtctgctgtcagtagcagcatc
atggaagaccaggaagaaattgtagatgtggataaggatgatgaaggagatctcatggtt
ccaataagttcttctgtgcctgaggaaactggtaatgtcgataactcctctgtgtcggaa
agtcgagaacttgcttcatctaacttgcagaatatacgaggaagaagaataagactgatt
ggtgctagatcaagaggcaggggtggaggggcatcaccatctacaagccaacagccatga
DBGET
integrated database retrieval system
