KEGG   Styela clava (leathery sea squirt): 120348171
Entry
120348171         CDS       T07291                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
sclv  Styela clava (leathery sea squirt)
Pathway
sclv03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sclv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120348171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sclv03041]
    120348171
Spliceosome [BR:sclv03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    120348171
 Complex C
   U5 SnRNP specific factors
    120348171
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 NBCH_WD40 ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_SPT8 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_NWD2_C WD_LRWD1 Beta-prop_Nup120_160 Nucleoporin_N KNTC1_N Phage_min_tail VID27
Other DBs
NCBI-GeneID: 120348171
NCBI-ProteinID: XP_039274232
LinkDB
Position
Unknown
AA seq 351 aa
MSALTAKRQSQMGALVPAKKAKQELALTNSSNSGALVQKGPPRTSGLLAPIMLLTGHEGE
ICCAKFHPEGELLASAGYERLIFLWTVYGECDNYHVIKGGHKGAIVELQFNTDGKYIFTA
STDKTVGMFDSETGEKIKRMKGHDSIVNSCASSRRGDQLVASGSDDCTVKVWDVRRKGAV
KSLQSTYQVTSVTFNDTAQQIMSGGIDNDIKVWDIRNEKSSMSLRGHKDTITGLSLSADG
SFLLSNSMDNTLRMWDVRPYAPQERCMRIFSGHQHNFEMNLLRCSWSPDGSRIAAGSANR
FVHVWDARSSQLLYKLTPGHAGCVNEVSFHPKEPIIMSCSMDKQIYLGELQ
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgtctgcccttactgctaaacggcaatctcagatgggagctcttgttccagcaaaaaaa
gcaaaacaagaacttgctttgacaaactcctccaattccggagcacttgtgcaaaaaggg
ccaccaagaacttctggattacttgctccaattatgctacttacaggacacgagggggaa
atttgttgtgcaaagtttcatcctgaaggagaattacttgcatctgccggttatgaacga
cttatatttttatggactgtgtatggggaatgtgataactatcatgttataaaaggagga
cacaaaggcgctattgtagaacttcagttcaatacagatgggaagtatatttttacagca
agcactgataaaacagttggcatgtttgattcagagaccggagaaaaaatcaaaagaatg
aaaggtcacgattctattgttaactcatgtgcatcgtcaagacgtggtgatcagcttgtc
gcatcagggagtgatgattgtacagtaaaagtatgggatgtgagaagaaaaggtgctgtc
aaatcattacaatcaacttatcaggttacttctgtgacattcaatgacacagcgcagcaa
attatgtctggtggaattgacaacgatataaaagtttgggatataagaaatgaaaaatca
tctatgtctttgagaggtcataaggatacaataactggactgagtttgagtgcagatggt
tcttttttactttctaattcaatggacaatacattgagaatgtgggatgttaggccttat
gctccacaagaacgctgcatgagaatattttcaggtcatcaacataattttgaaatgaat
cttttgaggtgtagctggtcaccagatggtagtcgaattgcagctggatctgcgaataga
tttgttcatgtatgggatgccaggtcatctcagcttttatacaaattaacacctggccat
gctggatgtgtaaatgaggtttcatttcatcccaaagaaccaatcatcatgtcctgctcc
atggataaacaaatttatcttggtgaattgcaatga

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