Styela clava (leathery sea squirt): 120348328
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Entry
120348328 CDS
T07291
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha-like
KO
K05236
coatomer subunit alpha
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sclv04131
]
120348328
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sclv04147
]
120348328
Membrane trafficking [BR:
sclv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
120348328
Exosome [BR:
sclv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120348328
Exosomal proteins of bladder cancer cells
120348328
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_RFWD3
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_ACSF4
WDR90_beta-prop_4th
BD_b_sandwich
Motif
Other DBs
NCBI-GeneID:
120348328
NCBI-ProteinID:
XP_039274380
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLASLHSGVIQLWDYRMCTLIDKFEEHDGPVRGVCFH
NQQPLFVSGGDDYKIKVWNYKLKRCLFTLLGHLDYIRTTMFHHDYPWILSASDDQTIRLW
NWQSRTCVAVLTGHNHYVMSANFHPKEDLVVSASLDQTIRVWDIAGLRKKNLSPGSEETR
NSGTGPTSIELFGTTDVVVKHVLEGHDRGVNWACFHPTMPLVVSAADDRLVKLWRMNESK
AWEVDSCRGHYNNVSCCSFHPKIELILSASEDKSIRVWDMSKRTGVQSFRRDHDRFWILT
CHPTLNLFAAGHDGGMVIFKLDRERPAFATNQNILYYVKDKYLRGLDFTTSKDTAVMQLR
GGSKVNPYSLSYNPAENAVLVTSRPSNVENSTYDLYQIPKNSDSSSPDAPEGKRSSGLTA
VWVARNRFAVLDRTHTIVIKNLKNEITKKIQVPGVDEIFYAGTGSLLLRTADGITLYDVQ
QKRALASVKIQKVKLVVWSGDMSHVALLAKHNIAICNRKLESSATVHENVRVKSGAWDES
GVFIYTTSNHIKYALLNGDNGIIRTLDLPIYITRVRGTSVFCLDRETRPRVLGIDPTEYR
FKQALVNRKYDEVLNMVRNAKLVGQSIIAYLQQKGYPEVALHFVKDEKTRFTLALECGDI
EVALAAAKALDDKQCWEALGEVALAQGNHQVVEMAYQRTKNFDKLSFLYLLTGNLEKLRK
MMKIAEIRKDTSGHYQAALYLGDVSERVKILRSCGQTPLAYLTAATHGMKEEAEQLKEQF
EDDQRVPEIPTNAELLQPPPPISQFEENWPLLTVSKGFFEGSMAGHGKTGALAADMDADI
DTGGWGDDADIILDEDGAIVEDYGDALDGDEDGGGEGGGGGWDVDDDDLELPADLELPDI
PASEGGEGYFVPPTKGTSQAQVWCNNSQLPVDHILAGSFDTAFRLLHDQVGVVNFEPYKT
LFMRTYARSRSTYIGIPSIPSVFSYPHRNWREAGGKAGLPLNGTKLADLASWLQDAYKLT
TAGKFEEAIKKFRYILLSVPLLVVDNKQEISEAQQLITICREYIVGLTMEQRRKELPKES
LDEQKRNCEMAAYLTHCQWQPVHLMLALRTAQNLFFKLKNYKTAAGFARRLLELGPKPQI
AAQTRKIIAACDKNPRDTHELRYDAHNPFDICGASYLPIYRGKPVEKCPLSGTCYQSQFK
GEVCRVTLCTEIGKDCVGLRVSAIQFR
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgttaacgaagtttgagacaaagtccgcaagggtgaaagggctttcctttcacccgaaa
cgtccatgggttcttgcttctctgcacagtggtgtaattcaactgtgggactaccgtatg
tgcacattgatcgataaatttgaagagcatgatggccctgttcgtggtgtgtgttttcat
aaccaacagcctttgtttgtatctggcggagatgactataaaatcaaggtttggaattac
aagcttaaaagatgtctgttcactctgcttggtcatcttgattacattcgtacgacaatg
tttcatcatgattatccatggattcttagtgcttcagatgatcagacaattcgtctatgg
aactggcaatctcgtacatgcgtcgctgtactgactggacacaatcattatgtcatgtcc
gctaattttcatccgaaagaagatcttgtggtatctgcgtctttggatcaaaccattcgt
gtgtgggatattgctggtttgagaaaaaaaaacctgtcgccaggttctgaggagaccagg
aattctgggacaggtccaacttcgatcgaactttttggcacaactgatgttgtggtcaag
catgttttggagggtcatgatagaggtgtgaattgggcgtgtttccacccaacaatgcca
ttggtcgtctctgctgctgatgacagactggttaaattatggagaatgaatgaatcgaaa
gcctgggaggttgactcttgtcgaggtcattacaacaatgtgtcatgctgttcatttcat
ccaaaaatcgaactcatcttgagtgcttcggaagacaagtctattcgagtatgggatatg
agcaagagaactggagtgcaatcattcagacgtgaccatgacagattttggattctgact
tgtcatcccacactcaatctgtttgcagctggccacgatggaggcatggtcattttcaaa
ctggatcgtgagagaccagcgttcgccacaaaccaaaacattctctattacgtgaaggac
aaataccttcgcggattggatttcacgactagcaaggacacagcggtcatgcaattgaga
gggggaagcaaggtgaacccgtattccctgtcatacaaccctgccgaaaatgcagttctt
gtaacatcacgaccatctaatgttgagaactctacttatgatctttatcagatccctaag
aatagcgactcatctagccctgatgcacctgaaggaaaacgttcatccggtctcactgct
gtatgggtggcaagaaatcgatttgctgtgttagataggacccatacaattgtcatcaag
aatttgaagaacgaaataaccaagaaaatccaagttccaggagttgacgagattttctac
gctggtacaggatctcttttactaagaacagcagatgggatcaccctttatgatgtacaa
cagaaaagggccctagcgtcagtgaagattcaaaaagtgaagttggtggtttggtctggt
gacatgtcccatgtagcactcctcgcaaaacataacatcgctatttgtaatcgcaagctc
gaatcatcagcaactgtacatgagaatgtgagagtcaaatctggagcatgggacgaaagt
ggggtcttcatctacacgacttcaaatcatattaaatatgctcttcttaatggtgataat
ggaatcattcgtactctcgacttaccgatttacatcactcgtgttcgtggaacaagtgtg
ttttgcttggacagagagaccagaccaagagtacttggtatcgatcctacagaatatcgc
ttcaaacaggcattggttaacagaaaatatgacgaagtgttgaacatggttagaaacgca
aaactggtcggtcaatcgatcatcgcgtacttgcaacaaaaaggatatcctgaagttgcg
ttacatttcgttaaagatgagaaaaccagatttactttggcgctggagtgtggtgatatc
gaggttgctcttgctgctgcaaaagctctcgatgacaagcaatgttgggaagctcttggt
gaagtcgctcttgctcaagggaaccatcaggtcgtggaaatggcttatcagagaaccaag
aatttcgacaagctttcttttctttacttgctcactggaaacttggagaaattgagaaaa
atgatgaaaattgctgaaattcgcaaagatacatctgggcattaccaggctgcattgtat
cttggagatgtgtccgagcgtgtgaaaatcctacgctcgtgtggacaaactccgctagca
tatctgaccgctgccactcatggaatgaaggaggaagctgaacaactcaaagagcaattt
gaggatgatcagagagtgcctgaaattccaaccaatgctgagttacttcaaccacctcca
cctatctctcaatttgaggagaattggccattgctaactgtcagcaaaggattctttgag
ggatcaatggctggtcacggtaaaacaggagcattggcagctgatatggatgctgacatt
gatactggtggatggggtgatgatgctgatattattctggatgaggatggtgcaatcgta
gaagattatggtgatgctttagatggagatgaagatggtggtggagagggtggaggagga
ggttgggatgttgatgatgatgacctggagcttcctgctgatctagagttgccagatatt
cctgcttctgaaggaggagaaggatattttgttcctccaactaaaggaacttctcaagct
caagtttggtgtaataattctcaacttcccgttgaccatatcttggctggttctttcgat
actgctttcaggcttttgcacgaccaagttggagttgtaaattttgaaccatacaagacc
ctctttatgcgaacctatgctcgttctcgttccacatacatcggcattccttccatccca
tccgtgtttagttatcctcacagaaattggcgagaagcagggggaaaggctggactgcct
ctcaatggaacaaaacttgcggatttagcgagttggttacaagatgcctataaattgaca
accgcgggaaaatttgaagaagccatcaagaagttcagatatattttgctttctgttcca
ttgttagttgttgacaacaaacaggagataagtgaggctcaacaactgatcaccatttgt
cgagaatatattgttggtttaaccatggaacaacgaagaaaagagctcccaaaagaaagc
ttagatgagcagaaaagaaattgtgaaatggctgcgtatctcacacattgtcaatggcaa
ccagtacatctaatgttagctctgagaacagctcagaatctgttctttaaattaaagaat
tataagactgctgctggatttgcaagaagactgctcgagcttggccccaagcctcagatt
gctgcgcagactaggaaaatcattgctgcttgcgataaaaatccacgggatactcatgag
ttgagatacgatgctcataatcctttcgatatttgcggtgcttcataccttccaatttac
agggggaaaccagtcgaaaagtgtcctctcagtggaacttgctaccaatcacaattcaaa
ggagaagtttgtcgtgtgactctatgtacagaaatcggaaaagactgtgtcggactgcga
gttagcgctatacagttccgctga
DBGET
integrated database retrieval system
