Styela clava (leathery sea squirt): 120348668
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Entry
120348668 CDS
T07291
Name
(RefSeq) collagen alpha-1(V) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
sclv
Styela clava (leathery sea squirt)
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sclv04147
]
120348668
00535 Proteoglycans [BR:
sclv00535
]
120348668
00536 Glycosaminoglycan binding proteins [BR:
sclv00536
]
120348668
Exosome [BR:
sclv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120348668
Proteoglycans [BR:
sclv00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120348668
Glycosaminoglycan binding proteins [BR:
sclv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120348668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
120348668
NCBI-ProteinID:
XP_039274800
LinkDB
All DBs
Position
Unknown
AA seq
1447 aa
AA seq
DB search
MKTSWFRLALVAITLFGYVTKAQDEEASIEEMAGVEDPTAATEVLDVDRSTSTPIAAPSA
HTFVECDIEHCLFEYKRQVSSIRGVEFDAFQRCRALAIMEKCMSTETPSFCAERDARYIF
VESKRLESVTVFDCKPVERLPTDASVNLFDAMIGVPLPENINFVRGKADAPAYEISKGKS
TGKASNRVFDDGFFEKFLLIEGTIKLKAGADGFLFSITDPTQTKVLFGLQMSDYVYLHMV
DHSDQPHSSTFNRIPEGKWTKFALTITDEEAVLYIDDISKSSTLRLGENDLKIPDIPDDA
FVFLASSGPESGQFEGTVEGITLRSTSRLISGLRNFFGSPVTVDPDDDEGSGSGDDSDGD
TEKSSERVPDGSDDEDSMKDLEDTEDFLPVYTTRVHINATTASEVIVTAASPAANASETF
TPDPTTTAITSTAAGFEEGSGEVETKETKLPTLEGSATHHMVTTTSIEPTTETTTTPKPT
TTTATTTTTPKPTTTTATTTTTTTPEPTTTTATTTTTTTPEPTTTTTTTTTTTTPEPTTT
TTEPVPITTTSTTTTTKATTTEASEPIPEAEVVIPEILPVTTSLPVTWEALESGTDEEFV
VPTEEEGEEVSPDDSVTLVRGPQGHKGEKGERGISLMGMKGERGEQGIAGIDGRPGIDGK
DGEPGVDGAHGLPGEDGEIGLMGPEGEAGPRGDVGPKGDPGESIVGPPGPQGEKGMTGEA
GESIVGPQGEKGMTGEPGLMGPPGPQGIPGEEGEDGEDGIGLPGPMGLPGPPGEFDLDDL
EISGFGPIKGIPGPPGPQGPPGPAGVGSIGPTGASGLNGEPGLAGPPGPQGKEGLPGKDG
EDGTAGAPGPVGQKGEPGNDGNQGIAGPPGPPGVCPARSISRRGDMPTDDEDVDGGSGDS
GCGGEVGLPGPQGPPGEPGLAGLPGSSGEQGPPGVSGVNGEHGKDGLDGRDGTPGVAGPK
GDAGEPGLPGRQGPAGLAGEKGMTGDTGAVGMPGTPGQNGRDGVDGETGPKGMTGLPGPP
GPPGAMLMPNGELNNGHGEKGAKGEPGEVEVISPSGVTIKEGPAGPRGLPGLAGPKGDMG
MPGHRGREGSVGKPGAAGPPGPPGPPGPGRPLAGGVSVPGPEGPQGPPGMTGRPGARGPP
GPAGEQGVPGRGYPGTPGRDGQNGVGSGPRVYRSENELLYAYDSSTDGDMAFESSRQTLY
VRTSSGWRPVNMGYPLIDRGTVESTTQSTTRDTTTRRTTSPVTTTRTTTTQAPIATTLST
RKPPTSNRLHLVALNYPLRGNTHGIAGADNLCYKQARAVGLRGTYRAFLSTKNQHVRSIV
HNRNMQHLPIVNMAEEVLFSSWSELFRTEGQLPEGAKIYSFNGRDVITDPRWPVKAVWHG
SDSLGKVSRMHNCADWRTFNLAVTGHASQLPTKSHPIAGLLKPRVFSCSSTFIVLCIENS
AHTWTYK
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgaagacatcttggttcaggctggccctcgtggcaataaccctgtttgggtacgtcaca
aaggcccaagatgaagaggcatcaatcgaggaaatggcgggagtggaagaccccacagct
gccacagaggtactcgacgtggaccgctcaacaagcacacccatagctgcgccttctgct
cataccttcgttgagtgtgatattgaacattgtctgtttgaatacaagcgacaagtttcc
tcaattcggggtgttgaattcgacgcttttcaaagatgccgtgcactcgcaatcatggaa
aaatgcatgtcaacggagacaccaagtttttgtgcagagagggatgcacgatacatattt
gtcgagtcgaagcgtttagaatctgtgacagtttttgattgcaagccagttgaaagattg
cctacagatgccagtgttaatctatttgacgccatgatcggcgttcctttaccggaaaat
atcaacttcgtacgtggcaaagcggacgccccagcctatgaaatatccaaaggaaaatct
acaggaaaagcatccaaccgggtattcgacgatggatttttcgagaaatttttattgatc
gaaggaactattaaacttaaagcaggcgctgatggatttttgttttcgataacagatccc
acccagaccaaagtacttttcggattgcaaatgtctgattatgtttaccttcatatggtt
gatcatagcgatcaaccacacagttccacgtttaatcgtatacctgaaggaaaatggaca
aaatttgcgctgaccattacagacgaggaggctgttttgtacatagacgatatatccaag
tccagtaccttgcgtcttggtgagaatgatctaaaaatacctgatataccagacgatgca
tttgttttcttggcaagcagtggcccagagagtggtcagtttgagggaacggttgaggga
ataacgctgaggtctacttcacgattgatcagcggtttgagaaatttctttgggtcaccg
gttacagtagaccctgatgatgacgaaggaagcggaagtggagacgattctgatggcgat
acagagaaaagtagtgaacgagtacctgatggttccgatgacgaagatagtatgaaagac
cttgaggacacagaagactttttaccggtgtataccacacgtgtgcatattaacgccaca
actgcctccgaggtaattgttacagcggcttcacccgcggctaacgcatcagagacgttc
acaccagaccctaccaccactgctattacatctactgccgctggttttgaggaaggatcc
ggggaagttgaaacgaaagaaaccaaacttcctactttggaaggctctgcaacgcatcat
atggtgacgacaactagtattgaacctactacagaaacaaccaccactccaaaacctact
acaaccacagctacgacaactaccactcccaaacctaccacaaccacagcaacgaccacg
acaactaccactcccgaacctaccacaacgacagctacgaccacgacaactaccactccc
gaacctacgacgactaccaccactacgacgacaacaactacaccagaacccaccacaacc
acaaccgaaccagttcccatcacaaccaccagtactaccactaccacgaaggctaccacc
actgaagctagtgaaccaataccggaagcagaagttgttataccggaaatacttccagta
acaacatctttgccagtgacctgggaggcacttgaatctggaacagacgaagaattcgtg
gtgccaacggaagaggaaggagaagaggtttctcctgatgatagtgttactttggtaaga
ggacctcaaggtcacaaaggagaaaaaggagagagaggaatatctctaatgggtatgaaa
ggcgaacgtggagaacaaggcatagctggaatagacggtcgtcctggcatagatggaaaa
gatggtgaaccgggcgttgatggagcccatggccttcctggtgaagacggagagattggc
ttaatgggacctgaaggggaagctggtccaaggggtgatgtaggacctaaaggggatcca
ggagaatcaattgtcggaccaccgggacctcaaggcgaaaaaggaatgactggagaagct
ggagaatctatcgtgggaccacaaggcgagaaaggtatgacaggagaaccaggtctgatg
ggtccacctggtccacaaggtattcccggtgaggagggcgaggacggcgaagacggcatt
ggactgccgggaccaatgggtctaccaggccctccaggagagttcgatttggacgacttg
gaaatttctggatttggaccaattaaaggaattccaggaccaccaggccctcagggacct
cctggtccagctggtgtaggctcaattggaccgactggggcttctggattaaacggagaa
ccaggactagccggtccacccgggccccaaggcaaagagggtctacctggaaaagatgga
gaagatggcaccgccggagcacctggcccagtcggacaaaagggagaacccggcaatgac
ggtaatcagggtattgcaggacccccaggtccccctggtgtctgccctgcacgatcaatt
tcaagaagaggagatatgccaactgatgatgaagatgtcgatggagggtctggagattcc
ggttgtggtggggaggtgggacttcctggcccccaaggaccgcctggagagcccggactg
gctggattaccgggttcatctggcgagcagggaccacctggagtttctggtgtaaacgga
gaacacggtaaagacggacttgacggaagggatggcacccctggtgtggcaggtccgaaa
ggagacgcaggagaacctggacttccgggacgccaaggaccagcaggactcgcaggagag
aagggtatgacgggcgatactggagctgttggaatgcctggtacacctggacaaaacggc
agagatggagttgatggagagactggtcctaaaggaatgacgggtttgcctgggccgcct
ggaccacccggtgcaatgctcatgcccaacggagaactcaataacggtcatggagaaaag
ggagcaaaaggagaacctggtgaggtagaagtaatttcaccatctggagtaacaattaag
gaagggccagctggaccgagagggcttccgggtcttgctggaccaaagggagacatggga
atgccaggacacaggggtcgcgaaggaagtgttggaaagcctggagccgcaggtccaccg
ggtcctccaggtccaccgggtcctggacgtccattagccggtggtgtgagcgttcctggc
ccagaagggcctcaaggacctcctggaatgactggacgacccggtgcaagaggaccgcct
ggacctgcaggagaacagggagttcctggtcgtggttatcctggtacaccaggaagagat
ggacagaatggagttggatcaggaccaagagtttacagatcagagaacgagttgctttat
gcatatgattcgtctaccgacggtgatatggcctttgagtcgtcgcgacagactctatat
gtcagaacttcaagtggatggcgtccagtgaatatgggctaccctctcatagacagagga
actgttgaaagcaccacacaaagtacaacacgtgataccaccacgcgacgtacaacttct
ccagtcacgactactagaacaacaactactcaagcaccaattgccactactttatcaaca
cgaaaaccacctacatccaacaggcttcatcttgttgctctcaattatcctctgcgtggt
aatacacacggtattgccggtgccgacaacttgtgctacaaacaggccagggcagtaggt
ctaaggggcacatacagagctttcctgtcaactaaaaatcagcatgttcgctccatcgta
cataacagaaacatgcaacatttaccaattgtcaacatggcggaagaagtattgttctct
tcgtggagtgagctattccgaaccgaaggacagcttccagaaggcgctaaaatttattcg
ttcaatggaagagatgttataacagatccaagatggcccgtcaaagctgtgtggcatgga
tccgactcacttggcaaagtgagccgaatgcacaattgcgcagattggcgaacattcaat
cttgccgtaacaggacatgcgtctcaacttccaaccaaatctcacccaatagccggttta
ttgaaaccacgagtattcagttgctcttctacgtttatcgtcctctgcatagaaaacagt
gcacatacctggacttataaatga
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integrated database retrieval system
