Schizophyllum commune: SCHCO_02160311
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Entry
SCHCO_02160311 CDS
T01331
Symbol
SCHCODRAFT_02160311
Name
(RefSeq) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
scm
Schizophyllum commune
Pathway
scm03030
DNA replication
scm03410
Base excision repair
scm03420
Nucleotide excision repair
scm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCHCO_02160311 (SCHCODRAFT_02160311)
03410 Base excision repair
SCHCO_02160311 (SCHCODRAFT_02160311)
03420 Nucleotide excision repair
SCHCO_02160311 (SCHCODRAFT_02160311)
03430 Mismatch repair
SCHCO_02160311 (SCHCODRAFT_02160311)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scm03032
]
SCHCO_02160311 (SCHCODRAFT_02160311)
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_02160311 (SCHCODRAFT_02160311)
Enzymes [BR:
scm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCHCO_02160311 (SCHCODRAFT_02160311)
6.5.1.6 DNA ligase (ATP or NAD+)
SCHCO_02160311 (SCHCODRAFT_02160311)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
SCHCO_02160311 (SCHCODRAFT_02160311)
DNA replication proteins [BR:
scm03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
SCHCO_02160311 (SCHCODRAFT_02160311)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
SCHCO_02160311 (SCHCODRAFT_02160311)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
SCHCO_02160311 (SCHCODRAFT_02160311)
NER (nucleotide excision repair)
Other NER factors
SCHCO_02160311 (SCHCODRAFT_02160311)
MMR (mismatch excision repair)
Other MMR factors
SCHCO_02160311 (SCHCODRAFT_02160311)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
9584930
NCBI-ProteinID:
XP_050202286
LinkDB
All DBs
Position
Unknown
AA seq
915 aa
AA seq
DB search
MGRQQTLGTFFAMPKSAKATPPQQASLKEMWGKKKASTSAKSAKDASDSANSEVKPSKPA
SGACAYTEDELRPETSTGEKTAKASDGTIGSKRRRDADSDDESSDAPGPSKSARTASRSS
PSTPAPPTPSSNATPKPDAMDVDPESDEEAAPKAVRKSRKPRIESDDEEAPTSSQKATSK
KTSLKQTKTKKDKATAADSKSEGRRRPKKASEKAAPATSDAEPDAEASVPPSSDVEAAEE
EEDEDDEALLEDEEGEGAATRAVAAKAAEAALARTSDVDIKGGWKVGDPVPYAALTKTFS
HIESTTKRLEKNAFLTAFLTLVIQRSAPNDHNSLLQAVYLCINRLSPDYIGIELGIGESL
LIKAISESTGRNAGLIKADLKKEGDLGLVAMNSKNSQRTLFKPKPLTLPFVFSNLKEIAL
SSGHSSQTKKVSIITKLLAACQDFEAKYIVRSLEGKLRIGNAERSVLVALAHAAVLAENA
KRDRKLHGEKLAARLEESTNIVKAVYSELPSYDKVIPALLDHGIDGLREHCKLSPGVPLK
PMLAKPTKAIGEVLDRFENKRFTCEYKYDGERAQVHLMEDGKIAVFSRNSEDMSKKYPDL
MEQIPRCIKDSTKSFVLDAEAVAIDRTTGKLMPFQELSKRKRKDVKVEDIQVKVCLFAFD
LLYLNGEPLLQKSLAERRVLLRESFQIVESEFQFAKSTDSETVEEIQTFLEESVKDGCEG
LMVKMLESDASYYEPSRRSINWLKLKKDYLAGVGDSLDLVVVGGYYGKGKRTNVYGAFLL
ACYDADSEEYQTICKIGTGFSEEALQSHYNVLKPLEMEKPRGDIKVGGAKPDIWFEPKVV
WEVLTADLSLSPVYTAAMGLVDERGISLRFPRFIRIRDDKNADNATGCEQVAEMYERQAL
AQGGGKKGKVVDDFW
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgggcagacaacaaactctcggaacattcttcgcgatgcctaaatctgccaaggcgact
ccccctcagcaggccagcctcaaggaaatgtggggcaagaagaaggcatctacgagcgcc
aagtccgccaaagacgcgtcagattccgccaattccgaagtgaagccttccaagccagcc
agcggtgcgtgtgcctatacagaagatgaacttcgccctgaaaccagcacaggcgagaag
acggccaaagcgtccgacggaactatcggaagcaagcgcagaagagacgccgactctgac
gatgaatcaagcgacgctcctggtccctcaaagtccgctcgcactgccagtcgttcatct
ccgtcgaccccagcacctcccaccccttcatctaatgcaacacctaaacctgatgccatg
gatgtcgatccagaaagcgacgaagaggctgctcccaaggccgtacgcaagtcgcgcaag
cccaggatcgagtccgacgatgaagaagcgcccacttcctcgcagaaggcaacttcgaag
aagacctctttaaagcagaccaagaccaagaaagataaggctactgcagcagactccaaa
tctgaaggtcgtcgccgacccaagaaagcgtcggagaaggctgcaccagcgacgtcggac
gctgaaccagacgccgaagccagtgtacccccgagcagtgatgttgaagcggcagaggaa
gaggaggatgaagacgatgaggctctgcttgaagatgaggaaggcgagggggctgctact
cgcgcggttgcagcgaaagccgctgaagccgcattagcacgcacttcagatgttgacatc
aaaggtggctggaaagtcggagacccagtaccgtatgccgcgctcacgaagactttctct
cacatcgagtccacaacgaagcgactggagaagaatgccttcctcacagcattcctgacc
ctcgtcatacaacgcagcgcgccaaacgaccacaactcgttgcttcaagccgtctacttg
tgcatcaacaggctcagtccagattacatcggcatcgagctgggtatcggcgagagtctg
ctcatcaaggcgatcagcgagtcgactggacgaaacgcgggcctcatcaaggctgaccta
aagaaggagggtgacctcgggctcgtcgccatgaactcgaagaacagtcagcggacgctg
ttcaagccgaagcctctgacgctacctttcgtcttctcgaacctcaaggagatcgcgctc
tcttctggtcattcctcgcaaaccaagaaagtatccatcattacgaagctgcttgctgca
tgtcaggactttgaggcaaagtacatcgtgcgtagtctagagggcaagctgcgcattggg
aatgcggagagatctgtacttgtcgccctagcgcatgctgcagttttggccgagaatgca
aagcgagatcgcaaactacatggcgaaaagctcgctgctcgcttggaagagagcacgaat
atagtcaaggctgtatacagtgagctgccctcatacgacaaggtcatacctgcactgctc
gaccacggcatcgacggcttgcgagagcactgcaagctttccccgggcgtacccctcaag
cctatgttggccaagccgacgaaggctataggcgaggtgctcgatcggttcgagaacaag
cgcttcacttgcgagtacaagtacgacggggagcgtgcgcaggtgcacctcatggaagac
ggtaagatcgcggtgttcagtcgcaactcggaggacatgagcaagaagtatcctgattta
atggagcagattccgcggtgtatcaaagacagcaccaagtccttcgtcttggatgccgaa
gctgtcgccatcgaccgcacgactggcaagctcatgcccttccaagagctcagcaagcgc
aagcggaaggatgtcaaggtcgaggacatccaggtcaaagtctgcttgttcgcgttcgac
ttgttgtacctcaacggcgagcctttgctgcaaaaatcgttggcagagcgccgcgtgctc
ttgcgcgagtccttccagattgtcgagagcgaatttcagttcgccaagtcgacggatagc
gaaacggtcgaggagattcagacgttcctcgaagaaagtgtgaaggatggctgcgagggc
ttgatggtcaagatgcttgagtcagacgccagctactacgagccaagtcgacgcagtatc
aactggctgaagctcaagaaggactacctcgccggtgtcggcgattcactcgaccttgtt
gtcgtcggcggctactacggcaagggcaagcgcacgaatgtctatggcgccttcttgctc
gcctgctacgacgccgactccgaggagtaccaaacgatatgcaaaatcggtaccggattc
agcgaagaggcgctacaatcgcactacaatgtactgaagcccctcgagatggagaagccg
cgcggggacatcaaggtcggaggcgcgaagccagatatctggttcgagcccaaggtcgtc
tgggaggtcctgacggcggacttgagtctgagtccagtgtacacggcagcgatgggattg
gttgacgagcgcggcatatcgttgcgctttccgcggttcattcggatacgcgatgacaag
aacgccgacaatgcgacgggctgtgagcaggtcgcggagatgtacgagcgacaagcgctt
gcgcaagggggtggcaagaagggcaaggtggttgatgacttctggtag
DBGET
integrated database retrieval system
