Schizophyllum commune: SCHCO_02289410
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Entry
SCHCO_02289410 CDS
T01331
Symbol
SCHCODRAFT_02289410
Name
(RefSeq) RNA helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
scm
Schizophyllum commune
Pathway
scm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SCHCO_02289410 (SCHCODRAFT_02289410)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scm03041
]
SCHCO_02289410 (SCHCODRAFT_02289410)
03009 Ribosome biogenesis [BR:
scm03009
]
SCHCO_02289410 (SCHCODRAFT_02289410)
Enzymes [BR:
scm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCHCO_02289410 (SCHCODRAFT_02289410)
Spliceosome [BR:
scm03041
]
Complex A
U1 snRNP components
U1 related factors
SCHCO_02289410 (SCHCODRAFT_02289410)
Complex B
SCHCO_02289410 (SCHCODRAFT_02289410)
Ribosome biogenesis [BR:
scm03009
]
Eukaryotic type
Pre-60S particles
Helicases
SCHCO_02289410 (SCHCODRAFT_02289410)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF2443
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
9596339
NCBI-ProteinID:
XP_003032253
UniProt:
D8Q560
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MGSLGGGLKTVDWASARLEKFEKNFYQEDKRVTARSEREIEEFRRSKDIKVQGRGVPRPV
TSFDEVGFPEYLMATIRAQGFPAPTAIQCQSWPMALSGRDVVAIAQTGSGKTISFALPAM
LHINAQPLLSPGDGPIALVLAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRD
LQRGVEVVIATPGRLIDMLETGKTNLRRVTYLVMDEADRMLDMGFEPQIRKIVSQIRPDR
QTLMFSATWPKDVQKLANDFLKDFIQVNIGSMELAANHNITQITEVCSDFEKRNKLIKHL
DQISSENAKVLIFVGTKRVADDITRYLRQDGWPALAIHGDKEQRERDWVLGEFKAGRSPI
LIATDVASRGLGMSPSLSFFMRPEGTCLRIIQQRCLSGPSVILSGCVSKRHQRYLDRVSM
RDES
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcctgggaggcggtctgaagaccgtcgactgggctagcgcccgcctcgagaag
ttcgaaaagaatttttaccaagaggacaaaagggtcaccgcccgcagcgagcgcgagatt
gaggagttccgccgttcgaaggacatcaaggtgcaagggcgtggcgttccgaggccagtc
acctcgttcgatgaggtcggcttccccgagtacctgatggccaccattcgtgcgcaaggc
ttccccgccccgactgccatccagtgccaatcctggcccatggccctctctggtcgcgat
gtcgttgccattgcccagactggtagcggaaagactatttcctttgccttgccagccatg
ctgcacatcaatgcgcaaccactcctttctcctggcgatggccccatcgcccttgtgctc
gcccccacgcgtgagttggcggtgcagatccagcaggagtgcaccaagttcgggtccaac
tcgcggatccgcaacactgccatctacggtggtgcgcccaagggccctcagattcgtgac
ctgcagcgtggtgttgaggtcgtcatcgccacccccggccgtctcatcgacatgctcgag
actggcaagaccaaccttcgtcgtgttacctacctcgtcatggacgaggctgatcgcatg
cttgacatgggttttgagccgcaaattcgcaagattgtcagccagattcgtcccgaccgt
cagaccctcatgttcagtgccacatggccgaaggacgtccaaaagcttgccaatgatttc
ttgaaagacttcatccaagtcaacatcggctccatggagctcgctgcaaaccacaacatc
acccagatcactgaagtttgcagcgacttcgagaagcgcaacaagctcatcaagcacctc
gaccaaatcagctctgagaacgcgaaggtcctcatcttcgtcggtactaagcgcgtcgca
gacgatatcacgagatatctgcgtcaggacggctggccggcccttgcaatccacggtgac
aaggaacagcgcgaacgtgactgggtcctgggcgagttcaaggccggccggtcacccatc
ctcatcgccacagacgtagcgtctcgtggtctcggtatgtctccatctctgtctttcttt
atgcgtccagagggcacttgtcttcggatcatccagcagcggtgcttgtctggtccgtca
gtgatactctcagggtgcgtatccaagaggcatcagcgataccttgaccgtgtgtccatg
cgtgacgaatcttga
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