Schizophyllum commune: SCHCO_02484574
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Entry
SCHCO_02484574 CDS
T01331
Symbol
SCHCODRAFT_02484574
Name
(RefSeq) antiviral helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
scm
Schizophyllum commune
Pathway
scm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCHCO_02484574 (SCHCODRAFT_02484574)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02484574 (SCHCODRAFT_02484574)
03041 Spliceosome [BR:
scm03041
]
SCHCO_02484574 (SCHCODRAFT_02484574)
03009 Ribosome biogenesis [BR:
scm03009
]
SCHCO_02484574 (SCHCODRAFT_02484574)
03016 Transfer RNA biogenesis [BR:
scm03016
]
SCHCO_02484574 (SCHCODRAFT_02484574)
Enzymes [BR:
scm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SCHCO_02484574 (SCHCODRAFT_02484574)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SCHCO_02484574 (SCHCODRAFT_02484574)
Spliceosome [BR:
scm03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SCHCO_02484574 (SCHCODRAFT_02484574)
Complex C
U4/U6.U5 tri-SnRNP related factors
SCHCO_02484574 (SCHCODRAFT_02484574)
Ribosome biogenesis [BR:
scm03009
]
Eukaryotic type
Pre-60S particles
Helicases
SCHCO_02484574 (SCHCODRAFT_02484574)
Transfer RNA biogenesis [BR:
scm03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SCHCO_02484574 (SCHCODRAFT_02484574)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
CC149
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9595847
NCBI-ProteinID:
XP_050202870
LinkDB
All DBs
Position
Unknown
AA seq
1017 aa
AA seq
DB search
MQVDQGAEPSAVKKPRTTSPGPVVLDDFETEAKREVAPSAGLTGGPAETAPVQLGHMVRH
KVAVPQGYNYIPISQHVPPAKPDREYKFELDPFQRVSVYAIQRNESVLVSAHTSAGKTVV
AEYAIAQCLNRKQRVIYTSPIKALSNQKYREMSSEFGDVGLMTGDTTINPSATCLVMTTE
ILRSMLYRGSEIMREVAWVIFDEIHYMRDKERGVVWEETIILLPHSVRYVFLSATIPNAM
EFAEWITQSHEQPCHVVYTDFRPTPLQHYLFPAGGEGIYLVVNEKSEFREDNFAKAMGKL
QDGTGDDPSDPFAGKGKGKKLKKGGDKKGPSDIAKIIKVIMNKNYNPVIVFSFAKRDCES
NAMSMSKMEYNNADEQATVTEIFENATASISPSDRQLPQITNLLPLLRRGIGIHHGGLLP
ILKEMIEILFQAGLIKVLFATETFSIGLNMPAKTVVFTDVQKFDGREFRNLSSGEYIQMS
GRAGRRGLDDRGVVIMMVNEKIEPSEARRMIKGEADRLDSAFHLGYNMIINLMKVEGISP
EFMLERCFFQFQSKASVPVLQKDLEKAEAERDKMKIPDEHLIAEYYDCRQQLDQLGEDFR
QVITHPTYSLPFLQPGRLIKVKYKKLDFGWGVVINYQKRLPPKNRPVDLGNLPPHSQYIV
DVLLNIARAPYQPLPKGQTWSPEKAAFVQPCPPGERGLPVVVPILLDVIEGISHVRIFLP
KDMRSENARETVWKSVLEVQRRFPEGIALLDPVQNMGIKDDKFQALLKKIALLESKLFSS
PMHKDPRLPELFTAYALKHQAMERVRELKQRIQQTHDILQLDELKCRKRVLRRLGFTTAD
DIVDMKGRVACEISTGDELLLTELVFNGVFNPLSPEHCAALLSCFVFDEKSEQVVKLKED
LAGPLRTLQETARRIAKVSKECKLPVDEDAYVQSFKVELMDCVLQWCKGASFAEICKLTD
VFEGSLIRVFRRLGELLRQMSTAAKVIGNTELQEKFDKATEILERPNSVIFCSSLYL
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtggaccagggtgcagagccttctgctgtgaagaagccgcggacgacatctcct
ggaccggttgtgctggatgactttgagacggaggcgaagcgtgaggtcgcaccaagcgcg
gggcttactggtggacccgcggagacagcaccagtgcaactgggtcatatggttcgacac
aaagtggccgttccccaaggctacaactacatccccatctctcagcatgttccccccgca
aagccagatcgcgaatacaagttcgagctcgaccccttccagcgcgtctccgtatatgcc
atccagcgaaacgagagtgttctcgtctctgcccacaccagtgcaggcaagacggtggtg
gccgaatacgcgatcgcccaatgcctcaatagaaagcagcgagttatctacactagcccg
atcaaggcgttaagtaaccaaaagtaccgcgagatgtcctccgaatttggcgacgttggc
ttgatgacgggagacacgaccataaatccttcagcaacatgtttggtcatgacaacagag
attctgcgctcgatgctctaccgcggctctgaaatcatgcgcgaagttgcatgggtcatc
tttgacgaaattcactacatgcgcgacaaggagcgtggtgtcgtctgggaggagaccatc
attctgctccctcacagcgttcgctacgtcttcctgtctgccaccatcccgaatgcgatg
gagttcgccgagtggatcacccagtctcacgagcagccctgtcacgttgtgtacaccgac
ttccggcctacgcctctgcagcactatctcttccccgcgggtggcgagggtatatacctt
gtcgtcaacgagaagagcgagttccgggaggacaactttgctaaagcaatgggcaagttg
caagacggcaccggcgatgacccttcggatcctttcgctggcaaaggcaaaggaaagaaa
ctcaagaagggcggagacaagaaaggcccctccgacattgccaagatcatcaaggtcatc
atgaacaagaattacaacccggtcatcgtcttctccttcgcgaagcgcgactgcgagtcc
aacgccatgagcatgtcaaagatggagtacaacaatgccgacgagcaggcaacagtcacc
gagattttcgaaaacgccaccgctagcatctccccctccgaccgtcaactcccccagatt
actaacttactccccctcctccggcgcggtatcggcatccatcacggcggtctacttccc
atcctcaaagagatgatcgaaatccttttccaagccggtctcatcaaggtcctcttcgcc
acagagaccttctccatcggtctgaacatgcccgcgaagactgtcgtcttcaccgacgtg
cagaagtttgacgggcgggagttcaggaacctgtcctcgggcgagtacatccagatgtct
ggtcgcgccggtcgtcgagggttggacgaccggggtgtggtgattatgatggtgaacgag
aagattgagccgtcggaggcgaggcgaatgatcaagggagaggcagacagattggactcg
gcgttccatctgggctacaacatgatcatcaacttgatgaaggtggaaggtataagcccc
gagttcatgctcgagcggtgcttcttccagttccagagcaaggcgagtgtgccggtgctg
cagaaggacctggagaaggccgaagcagaacgcgacaagatgaagatccccgacgagcac
ctcatcgccgaatactacgattgccgacaacaactcgaccagctaggcgaggacttccga
caagtcatcactcatccaacgtactcccttcccttcctccaacccggtcgcctcatcaag
gtcaagtacaagaaactcgactttggctggggcgtcgtcatcaactaccaaaagcgctta
ccaccaaagaaccgccccgtcgacctcggcaacctccctccccactcccaatacatcgtc
gacgtcctccttaacatcgcccgcgccccctaccaacctctccccaaaggccagacctgg
tcgcccgaaaaggccgctttcgtccagccttgtccaccaggcgagcgcggcttacctgtc
gttgtacccatcctgctcgacgtcatcgaggggatcagccatgtccgcatattcctaccg
aaggacatgcggtcagagaacgcgcgcgagacggtgtggaagagcgtgctggaggtgcag
aggcggttcccggaggggattgcgctgctagatcctgtgcagaatatggggatcaaggat
gacaagttccaggccttgttgaagaaaattgccctcctcgagagcaagctcttcagcagc
ccgatgcacaaggacccgcgcctccccgagctcttcaccgcctacgccctcaagcaccag
gccatggagcgcgtccgcgagctcaagcagcgcatccagcagacgcacgatattctccag
ctcgacgaactcaagtgccgcaagcgcgtgttgcggcgactgggcttcacgacggcggac
gacatcgtggacatgaagggtcgcgtggcatgtgagatcagcacgggcgatgagttgctg
ttgacggagctggtgttcaatggcgtgttcaacccgctgtcgccggagcactgcgcggcg
ctattgagttgctttgttttcgatgagaaaagcgagcaagtcgtcaagctgaaggaagac
cttgccggtcccttgcgaacattgcaggagactgcgcgtcgcattgcgaaggtctccaag
gagtgcaagctcccagtggacgaggatgcctacgtgcaatcattcaaggtcgagctcatg
gactgcgtcttgcaatggtgcaaaggtgcatcgttcgcggaaatttgtaagttgaccgac
gtcttcgaaggcagtctcatccgtgtcttccgtcgtttgggcgagctcttgcggcagatg
tccaccgccgcgaaggtcatcggtaacaccgagctccaagaaaagttcgacaaggcaacg
gagattctggagcgccccaactcggtcatcttctgctcgtccctctacttgtaa
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integrated database retrieval system
