Schizophyllum commune: SCHCO_02511160
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Entry
SCHCO_02511160 CDS
T01331
Symbol
SCHCODRAFT_02511160
Name
(RefSeq) TPR-like protein
KO
K12600
superkiller protein 3
Organism
scm
Schizophyllum commune
Pathway
scm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCHCO_02511160 (SCHCODRAFT_02511160)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02511160 (SCHCODRAFT_02511160)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SCHCO_02511160 (SCHCODRAFT_02511160)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_2
TPR_19
TPR_8
TPR_CcmH_CycH
TPR_17
TPR_1
TPR_14
TPR_11
TPR_12
TPR_22
TPR_9
ARM_TT21_N
ARM_TT21_5th
ANAPC3
PknG_TPR
DUF6584
TPR_20
Motif
Other DBs
NCBI-GeneID:
9594269
NCBI-ProteinID:
XP_050198978
LinkDB
All DBs
Position
Unknown
AA seq
1269 aa
AA seq
DB search
MSSAFAKQKLKAARDALGKKKYDDAKNAASQVLEYEPDNYNAHVFLGLACLELGEHDNSE
KAYRTAIDLNPSQLLAWQGLSKFYEKTGASDKYLDTLTKLADLHAKAGDATKCAEALQKF
LDIRRANGSRQQLVDALGLFLPGSPYYDAIATLEPPDFTNPESSATFFTQSAVHNSLPIL
EEMVALLEQDEAEQLKREVEKRRTRLGAAGPEQLRREVGREIWGTSKLPTLYNEIINHPK
TSDELRRETESKVLFYKRQYLFALPAGKEKDEIRGQVEEMANGVVVLQVPDELAWTTYLE
LKDCATVEEYEYDTLRQYLRLFPTLPLGSMIKGYLSYFGIPLEEEEEDDEDVKKAPIPGG
DEDPFDLVMDAFASLSDSTIACRLIADIYLHEEDWAQASKTSSSGLELVSRVETNYGKKA
ARTRMGFNVVLATSLVHLFPPKHHARALPILDDVLSQDPLNVPALMGRAYVLEAAQNWNE
AAECLNKVVSILPDDLDDGLRAKEELAWCRSQQGDLAGAVEALSEVKETLNGLEGRELDQ
ARCLWRIGKCYWDMGGDDREKCYPNFIQALKKNPSYAPAFTSLGIYYSECASPPDPTRAS
KCFQKAFELDAREAEAGRRLAEAFADEGEWDLVEVVARRTIEGEGGLDAGVGASGAAAKR
FLPTNAWAWKAIGVVDLVHRNYPSAIQSFQIALRAHPDDAQLWVRLGEAYGKAGRHAAAI
KALEHAQELAPDDWVCKHLIADLRRQTGHFAEAVAVFEGILESQPGEVGVVAALAQTYLD
LGRSEAAGGFTARSEESLAQAAINAMKVIREHPGFRAVAWKVVGDAAFALSEREAFDDPH
IVLSVLNDILMLLEDTKHERLEGIVQPPYISGRTNVTNVDAATIAVLAYDLRVDLNVTEK
VARASAWFDLGTALRSWLTKLPSSSSVGARAEKLALSCMTSGLREDPANETYWMYLGDAH
FTSQPKTAQHCYIRALDIDNKNVELWTRLGLLYLHHDDVQLANEALYRAQVLDPDYTLAW
IGQAMVAIANDHEKDATTLLEHAVGLSATIRTYATLRAKASGTTNPDLVLPVFDVLERYL
QKRPNDPTGLHLSALVHEALGHAERGADLAGRAVDLLEALYEETEDSGIERQYTIATSNR
ARMQLALGAPAEAVAGWETVSGLLEGGEGPEVTTLRVQAGFGIGLARMQLGELEGALEAF
QGALEEAGEDLALRGHVAVLLAQALWSLGTEEGRESAKAQLLDWCVPSTIELVVFLIIAF
AVYLLILRT
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcggccttcgccaaacagaagctcaaggccgcgcgagacgccctgggcaagaag
aagtacgatgatgcaaagaatgcagcctctcaagttcttgaatacgagccggataactac
aatgctcatgtcttcctcgggctcgcttgcctagagctcggcgagcacgataacagcgag
aaagcatatcgcacggcgatcgacctcaacccttcacagctactggcatggcagggcttg
tccaagttctacgagaagacaggcgcgtcggacaagtaccttgacaccctcaccaagctc
gccgatctacacgccaaggctggcgatgcgaccaaatgcgcagaagcactccaaaagttc
ctcgacatccgccgcgcgaacgggtcgcgccagcagctcgtcgacgccctcggcctcttc
ctccccggctctccctactacgatgcgatcgcgactttggaaccgcccgacttcaccaac
cccgagtcgagcgcgacattctttacgcagagcgccgtgcataattcattaccgatcctc
gaggagatggtcgcgcttctggagcaagacgaggccgagcaactcaagcgcgaggtcgag
aagcggcggacgcggctgggggctgcgggccccgagcagctcaggagggaggtcgggcgt
gagatatggggcacgtcgaagcttcctacattgtacaacgagatcatcaaccatcccaag
acttccgatgaactgcgtcgcgagacggagtcgaaagttctattctacaagcggcaatac
ctctttgcacttccagcagggaaggagaaggatgaaatacgcggtcaggttgaggagatg
gccaacggtgtcgtagttctgcaagttccggacgaactcgcgtggacgacgtaccttgag
ctaaaggactgcgcaactgtagaagagtatgaatacgatacgctgcgtcaatatctgcgc
cttttccctacgctgccgctcgggtctatgatcaagggctacctatcatactttggcatc
cctctcgaagaggaagaggaagacgatgaggacgtcaagaaggcccccatcccaggaggg
gatgaggaccctttcgatctggtcatggacgccttcgcgtcgctgtccgactcgacaatt
gcttgtcggctcatagccgacatatacctgcatgaagaagactgggctcaggcgtcgaag
acatccagcagcggcctcgagctggtgagtagagtggagactaactacggaaagaaagcc
gcaaggacacgcatgggcttcaacgtcgtacttgccacctcacttgtccacctcttccct
cctaagcaccatgctcgcgcccttcccatcctcgatgatgtcctatcgcaggaccccctc
aacgttcctgcgctcatgggacgagcatacgtcctggaggctgcccagaactggaacgag
gcagcagaatgtctgaacaaggtcgtttccatcctccccgacgatctcgacgacggtcta
cgcgccaaggaagagctggcttggtgtcggagccaacagggtgaccttgcaggcgctgtc
gaggcactctcggaggtgaaggagacgctcaatgggctcgaaggccgcgaactcgaccaa
gccagatgtttgtggcgcatcggcaagtgctactgggacatgggaggcgacgatcgcgag
aagtgctatccaaacttcatacaagcgctcaagaagaacccatcgtatgcaccagccttc
acgtcgttgggtatctactacagcgagtgcgcgtcgccgccggatccgacgcgtgcctca
aagtgctttcagaaggcgttcgagctcgacgcgcgcgaggcagaggctggacggcggctc
gctgaagccttcgcggacgaaggagaatgggaccttgtcgaggtcgttgcaagacgaaca
atcgagggcgagggaggtttggacgctggtgttggcgccagtggtgctgccgcaaagcgt
ttcctgccgaccaatgcgtgggcatggaaagcgatcggcgtagttgaccttgtccatcgc
aactacccttccgctatacagtccttccagatcgctctccgtgcacatccagatgacgca
cagctatgggtgcgcctcggcgaggcgtacggcaaagcagggcgtcatgccgccgctatc
aaagccctcgagcacgcacaggaactggcgccggacgattgggtctgcaagcacctcata
gctgacctgcgtcgacagacaggccacttcgcggaggctgtcgctgtcttcgagggcatc
ctggagagtcaacccggagaagtaggcgtggttgcagccctcgctcagacctaccttgat
ctcggtcgatcggaggctgcaggcggcttcaccgcgcggtcagaggaatctctcgctcag
gcggccatcaacgcaatgaaggtcatccgcgagcaccctggcttccgcgctgttgcgtgg
aaggtggtgggcgatgcggcgttcgcgctttcggagcgcgaagcgttcgacgacccccac
attgtcctgtcggttctcaacgatatcctcatgctattggaagacaccaagcacgagcga
ctcgaaggcatcgtgcagccgccgtacatctcaggccgcaccaatgtgacaaacgtggac
gccgcgacgatcgccgttctggcctacgacttgcgcgtggacctgaacgttacggagaag
gtcgctcgagcgagcgcttggttcgacctgggcacggcgcttcgctcgtggttgaccaag
ctgccatcttcttcttcagtaggcgcgagggcagaaaagctcgcgttgtcgtgcatgacg
tcgggtctgcgtgaagatccggcgaacgagacgtactggatgtatctgggcgacgcgcat
ttcacgtcgcaacctaagacggctcagcattgctacatcagggccctggacatcgacaac
aagaacgtcgagctttggacacgcctcgggctgctttatctgcaccatgacgatgtacaa
ctcgccaacgaagctttgtatagagcgcaggtacttgacccggactacaccttggcttgg
atcggccaggcgatggttgcgatcgcgaacgaccatgagaaggacgctacgacgttgctg
gagcatgcagtcggtttatcggcgaccattcgcacgtacgctactttgcgtgccaaagca
agtggaacaacaaaccccgatctagttctgccggtattcgatgtcctcgagcgctacttg
caaaaacggccaaacgaccctaccggtctacacctctcagctctcgtccacgaagccctc
gggcatgccgaacgaggcgcggacctcgcggggcgcgcggtagacttgctcgaagcccta
tacgaggagaccgaagactcgggcatcgagcggcagtacactatcgcgacctcaaatcgt
gctcgaatgcaacttgccctaggtgctcctgcagaggccgtcgcgggctgggaaaccgtc
agcggtctgttggaaggaggggaaggccccgaggtcactacattgcgagtgcaggccgga
ttcggcatcggcctggcgcggatgcagctcggcgagctggaaggcgcactggaggccttt
caaggtgctttggaagaagcgggagaggatttggctttacgagggcatgtcgcggtgctt
cttgcacaagcgttgtggagccttggtacagaagagggtcgcgagagcgcgaaggcgcag
ctcctcgattggtgcgttccgtcgactatagagctcgtagtgtttctgatcatagctttt
gcagtatatcttctgatcctgagaacctga
DBGET
integrated database retrieval system
