Schizophyllum commune: SCHCO_02511582
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Entry
SCHCO_02511582 CDS
T01331
Symbol
SCHCODRAFT_02511582
Name
(RefSeq) TFIIH basal transcription factor complex, subunit SSL1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
scm
Schizophyllum commune
Pathway
scm03022
Basal transcription factors
scm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SCHCO_02511582 (SCHCODRAFT_02511582)
09124 Replication and repair
03420 Nucleotide excision repair
SCHCO_02511582 (SCHCODRAFT_02511582)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scm03021
]
SCHCO_02511582 (SCHCODRAFT_02511582)
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_02511582 (SCHCODRAFT_02511582)
Transcription machinery [BR:
scm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SCHCO_02511582 (SCHCODRAFT_02511582)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SCHCO_02511582 (SCHCODRAFT_02511582)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
9594117
NCBI-ProteinID:
XP_003029771
UniProt:
D8QC45
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MPDEDDFMMAIDSDSDMEEMGLRSKKGKGKAADKKRDKGKAKEKAETLAYTWEASYTRSW
DTVQEDESGSLQGAVEDWVVRARRKRLQAPSTAIRRTIIRHLVLLLDLSSAMLDRDMRPT
RFDLMLQYAREFVVEWFDQNPLGQIGVVGMRSGIGERICEMTGNPQDVLKSISERHRLEP
QGEPSLQNAIEMARSSMSHLPTHSSREILLIFGSLTTCDPGDIHDTLDTCVRQKIRVSVV
ALAAEMKICREFCDKTGGQFGVALNEGHFRDILFELVPPPAQRALGGAGMGAPGKATAAS
GPSADLMMMGFPTRLPDTTPPSLCACHGELRSAGFLCPRCQSKVCDVPTDCDVCGLMIVS
SPHLARSYHHLFPVRPYAAIQAAEVAGAANGAAGAGAKTTCHACARAFPTTPAANVSEGM
SPVGRYRCPECHFDFCSECDVFIHDVVHACPGCGR
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgaagacgacttcatgatggccatcgactcggactccgacatggaggagatg
ggcctgagaagtaagaagggcaaaggcaaggcggcggacaaaaaacgcgacaagggcaag
gcgaaggagaaggcagagacactcgcatacacttgggaagcatcgtatacgcgttcgtgg
gacacggtacaggaggatgagtctggcagcttgcagggtgctgttgaggattgggtcgtc
cgggcgcgtcggaaacgcctacaagccccctctactgcgattcggcgcacgatcatccga
cacttggtgttactcctcgatctgtcgagcgcgatgctcgaccgagatatgcgcccgact
cgcttcgacctcatgctgcaatatgcgcgtgaatttgtggttgaatggtttgaccagaac
ccgctcggacagatcggtgtcgttggcatgcgatccgggattggcgagcgaatatgcgag
atgactggcaacccgcaggacgtgttgaagtccatttctgagcgtcatcgtctcgaaccg
cagggggaaccaagcttacagaacgcgattgagatggcgcgtagctcgatgagccacctc
cctacccactcctcccgcgaaatcctcctcatcttcggctccctcacaacatgcgacccc
ggcgacatccacgacaccctcgacacctgcgtccgccaaaaaatccgcgtctccgtcgtc
gcgcttgccgccgaaatgaagatctgccgtgagttctgcgacaagacgggcggacaattt
ggcgtcgcgctcaacgagggccacttccgcgacatcctcttcgagcttgttccaccgccg
gcccagcgcgccctgggaggtgctggtatgggcgccccagggaaagcgaccgccgcctcc
ggcccctccgccgacctgatgatgatgggcttcccgacacgcctaccggacacgacgcca
ccgagcctgtgcgcctgccacggcgagctgcgcagcgcgggcttcctgtgcccgcggtgc
cagagcaaggtgtgcgacgtgccgacggactgcgatgtgtgcgggctcatgatcgtgagc
tcgccccatttggcgaggagctatcatcatttgttcccggttaggccgtatgcggcgatc
caggcggcggaggtggcgggcgcggcgaacggggctgcgggggcgggggcgaagacgacg
tgccatgcgtgcgcaagggcatttccgacgacgccggctgcgaatgtgagcgagggtatg
agtccggtggggaggtatcgatgtccggagtgtcacttcgatttctgctcggagtgcgat
gtgtttatacatgatgttgtgcatgcgtgtccggggtgtggtagatag
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