Schizophyllum commune: SCHCO_02526654
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Entry
SCHCO_02526654 CDS
T01331
Symbol
SCHCODRAFT_02526654
Name
(RefSeq) replication factor-a protein
KO
K07466
replication factor A1
Organism
scm
Schizophyllum commune
Pathway
scm03030
DNA replication
scm03420
Nucleotide excision repair
scm03430
Mismatch repair
scm03440
Homologous recombination
scm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCHCO_02526654 (SCHCODRAFT_02526654)
03420 Nucleotide excision repair
SCHCO_02526654 (SCHCODRAFT_02526654)
03430 Mismatch repair
SCHCO_02526654 (SCHCODRAFT_02526654)
03440 Homologous recombination
SCHCO_02526654 (SCHCODRAFT_02526654)
03460 Fanconi anemia pathway
SCHCO_02526654 (SCHCODRAFT_02526654)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scm03000
]
SCHCO_02526654 (SCHCODRAFT_02526654)
03032 DNA replication proteins [BR:
scm03032
]
SCHCO_02526654 (SCHCODRAFT_02526654)
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_02526654 (SCHCODRAFT_02526654)
Transcription factors [BR:
scm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
SCHCO_02526654 (SCHCODRAFT_02526654)
DNA replication proteins [BR:
scm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
SCHCO_02526654 (SCHCODRAFT_02526654)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
SCHCO_02526654 (SCHCODRAFT_02526654)
MMR (mismatch excision repair)
SCHCO_02526654 (SCHCODRAFT_02526654)
DSBR (double strand breaks repair)
HR (homologous recombination)
SCHCO_02526654 (SCHCODRAFT_02526654)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CDC24_OB3
RADX
HROB
Motif
Other DBs
NCBI-GeneID:
9587358
NCBI-ProteinID:
XP_050203101
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MSVGLLTEGAIMRLATCDDDDDLFNSGVVLQALSVKSINEGKEGKQGEKPAPKSGQPERL
RIILSDGEWFMQAMLATQLNDVGIEKNSIVRISRASRNIVQNRRLVIVLGLEIVQHCDEK
LRRDPNDEKQPYTLPSEYLKVKPDGENGQSPAPQSKPAAAPSTSTVPRTATPQLPAQPHR
DSKNTAPNGRSIYPIEGLSPYQNNWTIKARVTQKSDIRRWSNQRGEGRLFNVTLMDDTGE
IRATGFNQAVDELYDKFEEGKVYYVSKARVNLAKKKFSNVNNDYELSLERSTEVEPCLEA
ADVPTIKYNFVKLDALQEVPKDSNCDVIGVVKEVGELSEITTKTTNRTMKKRELTLVDDT
GYSVRVTLWGNTAEKYEEEGHPVIAFKGVKVGDFGGRSLSMLMSSMMFVNPDTTEAFHLR
GWFDDDGKTLQFSSHTSGGGAGTGRGFDRDDQRTLMEIKNANLGMGDQPDYFSSRATIMH
IKDNNFAYPACRSPDCNKKVVENGPGEWRCEKCNVSHSSPDYRFMLQLAVADLHGQAWFQ
GFNDAGQVIFNRSANEIMQMKESGDDDGFLRAFAQANYQAFNFNCRAKADTWNDETRVRY
GITKVEPVDFVKEAQYMRDKLQSEWGAEI
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaggtttgctcaccgagggcgctattatgaggctcgctacttgtgacgacgat
gacgacctcttcaactccggtgtcgttctgcaagccctgtcggtcaaaagcatcaacgag
ggcaaggaaggcaagcagggggaaaagcctgcacccaagtcgggtcagcctgagcgcctt
cgcattatcctgtcggacggcgaatggttcatgcaagccatgcttgccacgcagctgaac
gatgtcggaatcgagaagaactcgatcgtgcgtatatcacgcgcgtcgcgtaatatagtg
cagaacaggaggcttgtcattgttcttggcctggaaatagtccagcattgcgacgagaag
ctgaggagggatcccaatgatgagaaacaaccgtataccctaccgtccgagtatctcaaa
gtcaagccggacggagagaacggccagtcaccagcccctcaatcgaagcccgccgcggcg
cctagcacatctaccgtcccccgcactgcgacacctcagctgcccgctcagccccaccgc
gacagcaagaacacggcgcctaacggtcgatccatctaccccatcgagggtcttagcccc
taccagaacaactggacgatcaaggcgcgtgttacgcagaagtccgacatccgcaggtgg
tcgaaccagcgcggagagggccgcttgttcaatgtcaccttgatggacgacacgggcgag
atccgcgccaccggtttcaatcaggctgtggacgagttatacgataagttcgaggagggg
aaggtgtactatgtatcgaaggcacgcgtcaacctcgccaagaagaagttctcgaacgtc
aacaacgactatgagcttagtctggagcgtagcacggaggtcgagccttgcttggaggct
gccgatgtgccgactatcaagtacaacttcgtcaagcttgacgctctgcaagaggtcccc
aaggattccaactgtgatgttattggcgtcgtgaaggaggtcggcgagctgtccgagatc
acgacgaagacgaccaaccgtacgatgaagaagcgcgaactaacgctggtcgacgacacc
ggctactccgtccgcgtcaccctctggggcaacaccgccgaaaagtacgaggaggaagga
caccccgtcatcgctttcaagggcgtcaaagtcggcgatttcggcggccgctccctctcc
atgctcatgtcgtccatgatgttcgtcaacccggacaccaccgaggccttccacctccgc
ggctggttcgacgacgatggcaagacgctgcagttttcgtcgcacacgagcggcggtggc
gcgggtaccgggcgcggctttgaccgcgacgaccagcgcacgttgatggagatcaagaat
gcgaatctggggatgggcgaccagccggactacttctcgtcgagggcgaccatcatgcac
atcaaggacaataactttgcgtatccggcatgcaggagcccagactgcaacaagaaggtc
gtagagaatgggcccggtgaatggcgctgcgagaagtgcaacgtgtcgcattcgtcgcca
gactatcgctttatgctgcagctcgccgtcgcggatctgcacggccaagcatggttccag
ggcttcaacgatgccggtcaggtcatcttcaataggtcggcgaacgagatcatgcagatg
aaggagtcgggcgatgacgacggcttcctccgcgccttcgcacaagcgaactatcaagcc
ttcaacttcaactgccgcgcaaaggccgacacatggaacgacgagactcgcgttcggtac
ggcatcacgaaggttgagcctgtggactttgtgaaggaggcgcaatacatgcgcgacaag
ctgcagtcggagtggggtgcggagatctaa
DBGET
integrated database retrieval system
