Schizophyllum commune: SCHCO_02705705
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Entry
SCHCO_02705705 CDS
T01331
Symbol
SCHCODRAFT_02705705
Name
(RefSeq) DEAD-domain-containing protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
scm
Schizophyllum commune
Pathway
scm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCHCO_02705705 (SCHCODRAFT_02705705)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02705705 (SCHCODRAFT_02705705)
03036 Chromosome and associated proteins [BR:
scm03036
]
SCHCO_02705705 (SCHCODRAFT_02705705)
Enzymes [BR:
scm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCHCO_02705705 (SCHCODRAFT_02705705)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
SCHCO_02705705 (SCHCODRAFT_02705705)
mRNA degradation factors
5'-3' decay
Decapping complex
SCHCO_02705705 (SCHCODRAFT_02705705)
Chromosome and associated proteins [BR:
scm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
SCHCO_02705705 (SCHCODRAFT_02705705)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
9596786
NCBI-ProteinID:
XP_003027845
UniProt:
D8QHI3
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
MSQATSSSTTPSNNDWKSGLRAPPKDLRPQTEDVLATKGTEFENMYLRRELLMGIFEAGF
EKPSPIQEEAIPKALQRRDILARAKNGTGKTAAFVIPTLQQVDPTKNKIQALLLVPTREL
ALQTSQVCKILGKHMGIQVMVTTGGTTLKDDILRLNETVHVLVGTPGRILDLAGKNVADL
SQCPVFVMDEADKLLSPEFAPVMEQLLSYLPNDRQVMLFSATFPMIVKDFKEKHMNNPYE
INLMEELTLRGVTQYYAYVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL
GYSCFYSHAKMLQSHRNRVFHDFRNGQCRNLVCSDLLTRGIDIQAVNVVINFDFPKNSET
YLHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQELGTEIMPIPQTIDRGLYVAPTGASE
EQQQQQKRAQAANGVQRNGTPQQRPPQRAPVPAGSGAAR
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagcaacatcctcttccaccactccgtccaacaatgattggaaatcagggctg
cgcgccccaccaaaagacttgcgaccacagacggaggatgtcctcgcgacgaagggcacc
gaattcgaaaacatgtacctccggcgcgaactcctcatgggcatcttcgaagccggcttt
gaaaagccgtcacccatccaggaggaggccatccccaaagccctccagcggcgcgacatc
ctcgcccgtgcgaaaaacggcacgggcaagaccgccgccttcgtcatccccacactacaa
caggtcgatccgaccaagaacaagattcaggccctcctgctcgtcccgacgcgcgagctc
gcgctccagacgagtcaggtatgcaagatcctcggcaagcacatgggcatccaggtcatg
gttaccaccggtggcacgacgctcaaggacgatatcctgcgtctgaacgagactgtgcac
gtcctcgtcggcacccccggccgtatcctcgatctcgctggcaagaacgtcgccgatctc
agccagtgccctgtgttcgtgatggacgaggcggataagctgctctcgcccgaattcgcg
ccggtgatggagcaactactatcgtacctgcccaacgacaggcaggtcatgctcttcagc
gccaccttcccgatgatcgtgaaggacttcaaggagaagcacatgaacaatccatacgag
attaacctcatggaggagttgacattgcgcggagtaacccagtactacgcgtacgttgag
gagagacagaaggtccactgcctcaacacgctcttctccaagctccaaatcaaccaatcc
atcatcttctgcaattccaccaaccgcgtcgagctcctggcgaagaagatcactgagctg
ggctactcgtgcttctactcacatgccaagatgctgcaatcgcatcgtaaccgcgtcttc
cacgacttccgcaacggccagtgccgtaacctcgtctgctccgacctcctcacccgcggt
atcgacattcaggccgtcaacgtcgtcatcaacttcgacttccccaagaactcggagact
taccttcaccgtatcggtcgcagtggtcgtttcgggcacctgggtctggcgatcaacctc
gtcacgtacgaggaccggttcaacttgtacaagatcgagcaggagctgggcacagagatt
atgccgataccccagacgatcgaccggggactgtatgttgcgccgacgggggcgtcggaa
gagcagcaacagcagcagaagcgtgcacaggcagccaacggcgtgcagcgcaacggcacc
cctcagcagcgccctccgcagcgcgcgccggttcccgcaggcagcggtgcggcgagatga
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