Schizophyllum commune: SCHCO_02743816
Help
Entry
SCHCO_02743816 CDS
T01331
Symbol
SCHCODRAFT_02743816
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolase protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
scm
Schizophyllum commune
Pathway
scm03013
Nucleocytoplasmic transport
scm03015
mRNA surveillance pathway
scm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SCHCO_02743816 (SCHCODRAFT_02743816)
09122 Translation
03013 Nucleocytoplasmic transport
SCHCO_02743816 (SCHCODRAFT_02743816)
03015 mRNA surveillance pathway
SCHCO_02743816 (SCHCODRAFT_02743816)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02743816 (SCHCODRAFT_02743816)
03041 Spliceosome [BR:
scm03041
]
SCHCO_02743816 (SCHCODRAFT_02743816)
Enzymes [BR:
scm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SCHCO_02743816 (SCHCODRAFT_02743816)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SCHCO_02743816 (SCHCODRAFT_02743816)
Spliceosome [BR:
scm03041
]
Complex C
Other components
EJC/TREX
SCHCO_02743816 (SCHCODRAFT_02743816)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SCHCO_02743816 (SCHCODRAFT_02743816)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9595020
NCBI-ProteinID:
XP_003038997
UniProt:
D8PLP5
LinkDB
All DBs
Position
Unknown
AA seq
437 aa
AA seq
DB search
MSAEHEELIDYEDENDVIPNGGAAAPATNGAAKAAAGAGEGGEEKPDFSGIHSTGFRDFL
LKPELLRSISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVD
GEVAVIVLCHTRELAFQIRNEYTRFAKYMPQIRVSTFYGGTPVSKDAEILRDKNACPHII
VATPGRLNALVRDKVLDAKHVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSA
TLAKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEAQKNRKLNDLLDTLEFNQ
VVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQEERINRYQAFKNFEKRILVATDIFGR
GIDVERVNIVINYDAPPDADSYLHRVGRAGRFGTKGLAITFVSSDADQQVMAAIQSRFEV
AVPELPDFIEPSSYMTA
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgaacacgaggaactcatcgactacgaggacgagaacgacgttatccccaac
ggcggagccgcggcacccgccacgaacggcgcagcgaaggcggcggcaggcgctggggag
ggcggggaggagaagccagacttctctggcatccactcgactggattcagggacttcttg
ttgaagcctgaactgttgcgctccattagtgacttgggtttcgagcacccatccgaggtt
cagcaggaatgtattcctcaagctgtcctcggcatggatgtcctgtgccaggccaagtct
ggtcacggaaagaccgcagtcttcgtcctcgccacgctccagcagctggagcctgtcgat
ggcgaagtagccgtcattgtgctctgtcacacgcgtgaacttgcgttccaaattcgcaac
gagtacactcgtttcgcgaagtacatgccgcagattcgcgtgtctaccttctacggtggt
acaccggtgtccaaggacgccgagattctccgcgacaagaacgcctgcccccacatcatc
gtcgccacccccggtcgcctgaacgccctcgtacgcgacaaggtcctggacgccaaacac
gtcaagcatttcgttctcgacgaatgtgacaagatgcttgagcagctcgacatgcgacgc
gacgtacaggagatcttccgcgcgacaccccaccacaagcaagtcatgatgttcagcgcc
acactcgccaaggagatccgcgcgacgtgcaagaagttcatggccaaccctctggaaatc
ttcgtggatgacgagacaaagctcaccctccacggtttacaacagcactacgtcaagttg
gaggaggcgcaaaagaacaggaagttgaatgacctgcttgataccctcgaattcaaccag
gttgtcatcttcgtcaagtccgtcgcacgagcgatcgaattggacaagcttctggtctcg
tgcaacttcccgagtatcagcatccactccggcctgcagcaggaagagcgtatcaaccgc
taccaggccttcaaaaatttcgagaagcgcatattggtagcgacggatatcttcggtcgt
ggtattgatgtcgagcgcgtgaatatcgtcataaactacgacgcgccgccggatgcggac
agctacctgcaccgtgtcggtcgtgccggtcgcttcggaacgaagggtctcgcgatcacc
ttcgtgtcgtcggacgccgaccagcaggtcatggccgccatccagtcccggttcgaggtc
gccgtgcccgagcttccggacttcatcgagcccagcagctacatgacggcgtag
DBGET
integrated database retrieval system
