Schizophyllum commune: SCHCO_058593
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Entry
SCHCO_058593 CDS
T01331
Symbol
SCHCODRAFT_058593
Name
(RefSeq) uncharacterized protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
scm
Schizophyllum commune
Pathway
scm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCHCO_058593 (SCHCODRAFT_058593)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_058593 (SCHCODRAFT_058593)
Enzymes [BR:
scm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SCHCO_058593 (SCHCODRAFT_058593)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SCHCO_058593 (SCHCODRAFT_058593)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SCHCO_058593 (SCHCODRAFT_058593)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_1
LRR_14
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
9591131
NCBI-ProteinID:
XP_003029309
UniProt:
D8QBS7
LinkDB
All DBs
Position
Unknown
AA seq
645 aa
AA seq
DB search
MHPHHQLQQHHHHQASLSHYPSPPNVNQLPLGSPVGQLLTSHWNEQLIKCEMIRSSRSPH
HRARANAIASRTVTKSAVPITNPNLIKAPPETNGKDPETNGRATPNPSEMSPSHQANHPS
STAAPVKETPRPTAARPPQGSWNSLDMGGIQIKNIPPTSGLFSFTFLTNLYLNHNALTSV
PPQLSKLRHLELLDLSGNQLTAIPPELGMITSLKEFYVFDNQITTIPPELGTLHQLRTLG
IEGNPLDMSIKSVIQKDGTQALIANLRDSCPVPAPAPDREWKDVSLPSDPILDHNAETFS
VLCYNILCDKYATEKLYGYTPSWALAWDYRKELILKELVAHQAEFVCLQEIDVGQFEDYF
LKHMMEHGYEAVFWPKPRARTMGEAERRTVDGCATFYRSDRFKLVEKHLVELSAVAMQRS
DFIKTDIMFNRLFNKEYIAVVCCFEDRSTGTRFIVANAHMFWNADFCDVKLVQVGMLMDE
LEKIAHAFARYPPPLKTESGQPPPSYSDGTKIPTIVCGDYNSVPRSGVYEYLSAGSLPPD
HPDFLGHSYGRYTEEGMRHRFGLRSAYALPGPGPGAELLPMTNYTPSFQGVIDYIWYSAP
TVAVQKVLGEVDRSYLEKVVGFPNAHFPSDHLAILAQFRVKSTRS
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcatccacaccaccagctgcaacaacatcaccatcatcaggcatccctctctcattat
ccttcgccaccgaacgtgaaccagctcccccttggatcgccagtcggtcagctcctaacc
agtcattggaatgaacagttgatcaagtgcgagatgatacggtcctctcgctcgcctcat
catcgagcgagagcaaacgcaattgcctcgcgcactgtgaccaagtctgccgtaccgatc
accaatcccaaccttatcaaggctccgccagaaaccaacgggaaggacccagagaccaat
ggccgcgctacgccgaatccctcagaaatgtcgcctagtcatcaagcgaaccacccctct
tccaccgcagctccggtcaaagagacacctagaccaacagcagcgcgcccgccgcagggg
tcgtggaactcgcttgatatgggtggcatacagatcaagaacataccgccaacatcgggc
ctcttctctttcacattccttaccaacctctaccttaatcacaacgccctcacatccgtg
cccccacaactctccaagcttcggcatctggaacttctggacctctcagggaaccagctg
acagcgataccgccggagctggggatgatcacgtcgttgaaggagttttacgtcttcgac
aaccaaatcaccaccataccgccggagctgggtacgctgcaccagttgcgcactctaggc
atcgaggggaaccctctggatatgtccatcaagtcggtcattcagaaggatggcacccag
gcgctcatagccaacctccgcgattcatgtcccgtccccgcgccggcaccagaccgcgag
tggaaggacgtgagtctgccatcggaccccatcctagatcacaacgcagagacgttcagc
gtgctctgctacaacatcctatgcgacaagtacgcgacggagaagttgtacgggtacacg
ccgtcttgggcgctggcgtgggattatcggaaggagctgatcctgaaggagcttgttgca
catcaggccgagttcgtctgcttgcaagagatcgatgtcgggcagtttgaggactacttc
ttgaagcatatgatggagcatgggtacgaggcggtcttctggccgaagccacgagcacgg
acgatgggcgaggcagagcgaagaactgtcgacgggtgcgcgaccttctaccggtctgat
aggttcaaactcgttgagaagcacctggtggagttgagcgccgttgcaatgcagcgttcc
gacttcatcaagacggacatcatgttcaatcgacttttcaataaggagtacatcgccgtc
gtttgctgcttcgaggaccgctcgactggcacgcgcttcatcgtcgccaacgcccacatg
ttctggaacgccgacttctgcgacgtcaagctcgtgcaggtcggcatgctcatggacgag
ctcgagaagattgcgcacgcgttcgcgcggtatccgccgcctctcaagaccgaatctggt
cagccgccaccttcgtactccgacggcacgaagatccccaccatcgtgtgcggagactac
aacagcgtgccgcgctcaggagtgtacgagtacctgtccgcggggagcttgcctccagat
cacccggacttcctgggacactcgtatgggcggtacacggaggaggggatgcgtcatcgg
ttcggtctgcgttcagcatacgcgctgccggggccgggacctggggcggaactgctgccg
atgacgaactacacgccgagcttccagggtgtgatcgactacatctggtactcggcgcca
acagtcgcagtgcagaaggtcttgggtgaggtggataggtcatatctggagaaggtcgtt
gggttcccgaacgcccactttccatcagaccatcttgccatcctcgcgcagttccgcgtg
aagtcgacccgtagttga
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