Schizophyllum commune: SCHCO_073589
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Entry
SCHCO_073589 CDS
T01331
Symbol
SCHCODRAFT_073589
Name
(RefSeq) DNA-dependent RNA polymerase II second largest subunit
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
scm
Schizophyllum commune
Pathway
scm03020
RNA polymerase
scm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCHCO_073589 (SCHCODRAFT_073589)
09124 Replication and repair
03420 Nucleotide excision repair
SCHCO_073589 (SCHCODRAFT_073589)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scm03021
]
SCHCO_073589 (SCHCODRAFT_073589)
03400 DNA repair and recombination proteins [BR:
scm03400
]
SCHCO_073589 (SCHCODRAFT_073589)
Enzymes [BR:
scm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCHCO_073589 (SCHCODRAFT_073589)
Transcription machinery [BR:
scm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SCHCO_073589 (SCHCODRAFT_073589)
DNA repair and recombination proteins [BR:
scm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SCHCO_073589 (SCHCODRAFT_073589)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
9585127
NCBI-ProteinID:
XP_003038823
UniProt:
D8PSD2
LinkDB
All DBs
Position
Unknown
AA seq
1204 aa
AA seq
DB search
MPMEYEDEDDNSITQEDCWTVISSFFDEKGLVRQQLDSFDEFIQNTMQELVDENPELILD
QAEQHTGHNFDQSKRFEIQFGQIYLSRPTITEADGSVVPVFPQEARLRNLTYAAPLYIEM
RQKTLHATDELDEAGEPIWRTVKEDEGNAVQKVHIGKVPIMLRSAFCILNKLSDQEIYDL
NECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTIS
QFQVKMFHRTKERSMGNVIKATIPYIKVDIPIWVVFRALNVISDRDILDHICYESTDPQM
LELLKPCIDDGFVIQEREVALDFIGNRGTTTGLNRERRVRYAQEILQKELLPHVSMAEGS
ESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKMTKDVYR
YLQKCVESNKDFNLNLAIKHHTISQGLKYSLATGNWGDQKKAGAAKAGVSQVLNRYTYAS
TLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSI
SAPVIDFLQEWNLESLEENARSSEATFTKVFVNGVWMGVHRDPAKLVETIRRLRRKDDIS
QEVSVVRDIREKELRVYTDAGRVCRPLFIVENQSLLLEKHHVHALTQGAKWDSLVKQGII
ELLDAEEEETVMIAMTPEDLENSRMTPEERAAQQAEEEVDMTATKVAHTMANTHTWTHCE
IHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIFLTNFILRMDTMANILYYPQKP
LATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYTDM
EKKSVGMMPTEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPD
SEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVRVRSTRIPQIGDKFA
SRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGNE
GDATPFTDLTVEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDD
KIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDAYRLH
VCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQAMNIAPRLYTTSTG
RIRD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgccgatggagtacgaggacgaggacgacaacagtataacgcaagaagactgttggacc
gtcatctccagtttcttcgatgagaagggccttgtgcgacagcagctcgactctttcgac
gagttcattcagaacacgatgcaagagctcgtggacgagaacccggaactcatcctggac
caggccgagcagcatactggacacaacttcgatcagagcaagcgctttgagatccagttc
ggccaaatctacctttcgagaccaacgatcaccgaagcggatggctcagtcgtcccagtc
ttcccccaagaggcccgcttgcgcaacctcacatatgctgcaccgctgtacattgaaatg
cgccagaagactttgcatgccacggacgagttggacgaggcgggtgaacccatttggagg
actgtgaaggaggacgaaggcaatgcggttcaaaaggtccacatcggcaaggtaccgatc
atgttgcgttctgcgttctgcattctcaacaagctgagcgaccaagaaatatacgacctc
aatgagtgcccctacgactccggaggatacttcatcatcaacgggtcggagaaggtcttg
attgcgcaggagcgcatggccacaaaccatgtctatgtcttcgccaaagctcagccctcc
cccatcaacttcttggccgagatccgtagtgccgtggagaagggtggcaagacgatcagt
cagttccaagtgaagatgttccaccggacgaaggagcggtcgatgggcaatgtcatcaag
gctaccattccctatatcaaggttgacatcccgatctgggtcgtcttccgcgccttaaac
gtcatttccgaccgtgacatcctcgaccacatctgctacgagagcaccgatccgcagatg
ctcgagttgctcaagccgtgtattgacgacggtttcgtcatccaggagcgcgaggtcgcc
ttggacttcatcggcaaccgtggtacaacaaccggccttaaccgcgagcgcagagtgcgg
tatgcgcaggagatcctgcagaaggaactattgccgcacgtctccatggccgagggttcg
gagtccaagaaggcctacttcttcggctacatggttcaccgacttttgcttgccgccctt
gagcgcagagagttggatgaccgtgatcacttcggcaagaagcgtcttgacttggcaggc
ccgctgcttgctggtctcttccgtatgctcttcaggaagatgacgaaggatgtttaccgc
tacttgcagaagtgtgtcgagtccaacaaggacttcaaccttaacctcgcgatcaagcat
cacacgatctcgcagggcttgaagtactctctcgccaccggcaactggggtgaccagaag
aaggctggcgcggcgaaggccggtgtctcccaggtgttgaatcgttacacatacgcgtcc
acgttgtcccatcttcgtcgttgcaacacgccactcggacgagagggcaagatcgcaaag
cctcgtcaactgcacaacactcattggggtatggtctgccctgccgagacccccgaagga
caggcttgcggtctcgtcaagaacctctcgctcatggcttgtatctcggtcggctccatc
tctgcgcccgtcatcgacttcttgcaggagtggaatttggagagcttggaggagaacgcg
cgctcgtcggaggcgaccttcaccaaggtcttcgtcaacggtgtctggatgggtgtccac
cgcgacccggcaaagctcgtcgagactatccgccgactgcgcagaaaggacgacatcagc
caggaggtttccgtcgtccgggatatccgcgagaaggaattgcgcgtgtacaccgacgca
ggtcgtgtatgtcgcccgctctttatcgtcgaaaaccagtctctgctgcttgagaagcac
catgtgcacgctctgacgcaaggcgcgaagtgggactcgttggtaaagcagggtatcatc
gaactgctggatgcggaggaagaagagaccgtcatgattgccatgacgcccgaggacctg
gagaactcgaggatgacaccggaggagcgcgccgctcagcaggccgaggaggaagtcgac
atgactgccacgaaggtcgcgcacacaatggcgaatacgcacacctggacgcattgcgag
attcaccccagcatgattctcggtatctgcgccagtatcattcccttccccgatcacaac
cagtcgcctcgtaacacctaccaatctgctatgggtaaacaagccatgggtatcttcctc
acgaacttcatcctccgcatggacaccatggcgaacatcctctactacccgcaaaagcca
cttgcgacgacgcgctccatggagtacctgaagttcagagaacttcctgctggccagaac
gccattgtcgctatcctgtgctacagtggctacaaccaggaagattccgtcatcatgaac
cagagctccatcgaccgtggtctcttccgtagtatctactacagagggtacacggacatg
gagaagaaaagcgtcggcatgatgcctacggaggagttcgagaagccctcgcgcgacaac
accctccgcatgaagcacggcacgtacgacaaactcgaggacgatggcttgattgcaccg
ggcacgggcgtcaacggcgaggatatcatcattggcaagacggcacccatcccgcccgac
agcgaagagctcggccagcggacgaagaaccacactcgccgtgatgtctcgacaccgttg
aagagcacggaaagcggtatcatcgaccaggttttgctcacgacgaacgaggatggcaaa
aagctcatccgcgtccgcgtccgctcgactcgtatcccacagatcggcgacaagttcgcc
tcgcgtcatggtcagaagggtaccatcggtatcacctaccgccaggaggacatgccgttc
accgcacagggtattgtccccgatatcgtcatcaacccgcacgccattccctcgcgtatg
actattggccacttggtcgagtgtctgctgtcgaaggtcgcgacccttatcggcaacgag
ggcgacgcgacgccgttcacggacctcacggtcgaggcggtgtcgaagagcctcgcggcg
aagggcttccagcagcgtgggctcgaggtcatgtaccacgggcacacggggcggaagctg
caggcgcaggtgtatctgggcccgacctactaccaacgtctcaagcacatggtggacgac
aagatccactcgcgcgcgagagggccggtgcagatcttgacgcgccagccggtggagggt
cgtagtcgtgacggtggtctgcgtttcggagagatggagcgcgattgtatgatctcgcac
ggtattgctgggttcttaaaggagcggctgttcgacgcatcggatgcgtaccgactgcat
gtttgcgatatctgtggtctcactgctattgcgaacttgaaaaagcaaagcttcgaatgc
cgtgcatgtaagaacaagaccgcatgctcgcagctgtacatcccctacgccgcgaagctg
ctcttccaggagctgcaggccatgaacatcgcgccacggttatacaccacctcgactggc
cgcatacgggactga
DBGET
integrated database retrieval system
