Solitalea canadensis: Solca_0275
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Entry
Solca_0275 CDS
T02084
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scn
Solitalea canadensis
Pathway
scn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Solca_0275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scn03019
]
Solca_0275
03009 Ribosome biogenesis [BR:
scn03009
]
Solca_0275
Enzymes [BR:
scn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Solca_0275
Messenger RNA biogenesis [BR:
scn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Solca_0275
Ribosome biogenesis [BR:
scn03009
]
Prokaryotic type
rRNA helicases
Solca_0275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AFD05419
UniProt:
H8KSV9
LinkDB
All DBs
Position
complement(345049..346890)
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AA seq
613 aa
AA seq
DB search
MNLFEQLGIGPKTVQAISELGFEAPTPIQEQAIPELLKGNRDFVGLAQTGTGKTAAFGLP
MLELIDLGLRQPQALVLCPTRELCLQITNDLVNFSKYLGQVSVVAVYGGASIINQMRDLK
RGAHIIVATPGRMLDIINRNVINFDNVRISVLDEADEMLNMGFQEDINAILSHTPDTKNT
WLFSATMPNEVRRISQNYMTDPFELTVGNRNEGNSNIEHEYYIAKARDKYAAFKRLVDFN
PEIFGIVFCRTKIETQEIAEALIRDGYNADALHGDLSQQQRDKVMKRYRDRSLQLLIATD
VAARGIDVNDVTHVINYSLPDDVESYTHRSGRTARAGKTGVSMAIINSKEMGKIRQIERI
IKKKFTKCDIPSGFDVCEKQLFALIHKVHNVQVNEQIDQYLERINAEFADVSKEDIIKRF
ASLEFNRFLDYYKNAPDLNARADERESRERGDRNTMRSGGKFTRLFVNLGSLDDFTRGDM
LRYVCDNAHVSGSKIGRIDVKGVYSFFEVESEIVDKVFEGFKQKDFNGRQVRIEISQDGD
RKREERRSGFGGGRSFSGNREGGERRGGFNGNRERGGDRDRNDRGDRGGRGGYGGNRERK
PSNSGSDDKRGRW
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattgggcattggcccaaaaactgtccaagctatttctgagctg
ggatttgaagctcctactcctatccaggaacaggcaatccctgaacttttgaaaggcaac
cgcgactttgttggtttggcgcaaactggtaccggtaaaactgcagcatttggtttacca
atgctagagcttatcgaccttggtctacgtcagcctcaggcattagtgctgtgccctact
cgcgagttatgcttacaaattactaacgacttagtaaacttcagtaaatacttaggtcag
gttagtgttgttgccgtttatggcggtgccagcattattaaccaaatgcgtgacctaaag
cgtggtgctcacattattgtggctacaccaggccgtatgctggatattatcaaccgtaac
gttatcaattttgataatgtacgtatctctgtattagacgaggctgatgaaatgttgaat
atgggcttccaggaagacatcaacgctattctttctcacactcctgatactaaaaacact
tggttattttcagcaaccatgcctaacgaagttcgtcgtatctctcaaaactacatgact
gatccgtttgaacttactgttggtaaccgtaacgaaggtaactcaaacattgaacacgaa
tattatattgcaaaagctcgtgataaatacgcagcgttcaaacgcttagtagactttaac
cctgagatctttggtatcgttttctgtcgtaccaaaattgaaactcaggaaattgctgaa
gcattgatccgtgatggatataatgcagatgctttacacggcgacttatctcagcaacaa
cgtgacaaagtaatgaaacgctacagagatcgttcattacagttattgattgctactgac
gttgctgcacgtggtattgacgttaacgacgtaacacacgttattaactactcattacct
gatgatgtggaaagctacactcacagaagtggtcgtactgcgcgtgccggtaaaaccgga
gtttctatggctattatcaatagcaaagaaatgggtaagattcgtcagattgaacgcatt
atcaaaaagaaatttactaaatgtgatatccctagcggatttgatgtttgtgaaaaacaa
ttatttgcattgatccacaaagttcacaatgtacaagtgaatgagcagatcgatcaatac
ttagaacgcatcaacgctgaatttgctgatgtaagcaaagaagatatcatcaaacgtttt
gcttcattagaattcaatcgtttccttgactactacaaaaatgcacctgatttaaatgca
agagcagacgagcgtgaaagtcgtgagcgtggtgatcgtaatactatgcgtagcggtggt
aaattcactcgtttatttgtaaacttaggttcattagacgacttcactcgtggcgatatg
ttacgctatgtttgtgataatgcacacgtaagcggaagcaaaattggccgtatcgacgtt
aaaggtgtttattcattcttcgaggttgaatcggaaatcgttgataaagtatttgaaggc
tttaaacaaaaagacttcaacggtcgtcaggttcgtatcgaaatctcacaagatggagat
cgtaaacgtgaagagcgccgttcaggttttggtggtggtcgctcatttagcggcaaccgc
gaaggtggtgagcgtcgtggaggtttcaatggaaatcgtgaacgtggtggagaccgtgat
cgcaatgatcgtggcgacagaggcggacgcggtggctacggaggtaaccgtgagcgcaaa
ccttctaacagtggtagcgacgacaaaagaggtcgttggtag
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