Solitalea canadensis: Solca_1239
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Entry
Solca_1239 CDS
T02084
Name
(GenBank) TonB-linked outer membrane protein, SusC/RagA family
KO
K21573
TonB-dependent starch-binding outer membrane protein SusC
Organism
scn
Solitalea canadensis
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scn02000
]
Solca_1239
Transporters [BR:
scn02000
]
Other transporters
Pores ion channels [TC:
1
]
Solca_1239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CarbopepD_reg_2
TonB_dep_Rec_b-barrel
Plug
CarboxypepD_reg
STN
USP7_C2
TTR_TEN1-4
DWNN
Cupredoxin_1
KH_1
Motif
Other DBs
NCBI-ProteinID:
AFD06333
UniProt:
H8KVF3
LinkDB
All DBs
Position
complement(1489120..1492497)
Genome browser
AA seq
1125 aa
AA seq
DB search
MNEKFTLSLSGKLVRHVLALLSGFMIAMGAQAQNAPELQQKITIGFKDTEVVSAINQIKS
KTSVKISFNSNDLTNAGKVTIVSKERTVEELLNEIVKQTNLEIKYDKDIVMLRPQTKASG
NDPKDNINIKGKVVSDQGEELPGVNISVKNTGIGTSTNGNGEFTLNHVPSNATIIASFIG
FETQEVAVNGRKELVIKLKTEAKGLEEVVVVGYGTQRKRDVVGAVSSVNVKNMEKLTGGD
VGTMLQGQAAGVMVAPGSGDPGAAPIIRVRGLSTIGNNDPLYVIDGIPGDINSVNPNDIQ
SIDVLKDASAATIYGSRASNGVIQVTTKRGTDGKIKVNVNSYYGVNQLSKRLPITNQSQY
NQIMLQTQKNDGEAPLDYTASNTYVDGNGQTQAYPNTDWQDEFFQAAPESKIDLSLSGGS
KDLKMNVSLGRYDQKGIVINTNFQKYNVQVNTDITKGKFKFGESMTFLSSDRRMLEGSNE
STANQQNAGYPLIYEMINRVPQFPVYNSENDGGFGGRIGTEMIDATNPVGIQTLVDNSEQ
RTSLIGNIYGEYQILQPLSFRLQYGINLDDSYAYSHIPTYYMGAKVQNPNAQLYEGRSKY
NRSILNAVLTFNKTFNNVHALNALAGYSQESDRLRSLSGSNNDLPSNDLWALNSGLGDKS
SGGTLVESSLISWFARANYAYNDKYLLAATVRVDGSSRFAPSYKYGTFYSFSGAWRVSSE
KFFQSSVINDLKIRAGYGTLGNQSIPNYQYLPPVINAGNDAVNYPLGTGIRQKIFTGGIV
TSASAPDIKWEESATFNAGVDLSVLNEKLTFVVDVFKTRTSDMLVTVPLPLSGGLLFNPY
KNAAEMENKGIDMALSYRGTAGKLKFDVTGNFTLNRNKVTKLGFAGESFTDGYMDFNNFP
TTRTEVGGEIGRFYLYKTAGVIKTQQDLDAVKAYQPNAQLGDVKFVDTNGDGELNDDDRI
FMGSGLPKFEYGLTANLSLGRFDMSMLFQGAQGNKIYNGAKRLMYQNTIHNKSTDLLDAW
TPENPNSDIPRTTVQDPNGNNSLPSDRFLENGSYFRLKSIQIGYKVKLPQLNSLRIYAGA
TNVFTITKYTGYDPGIVNYSTFARGVDRGLYPLSRSFFAGLSFDF
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaaaaatttaccctatccttatcgggaaagctggtacggcatgtgcttgcactt
ctttccggatttatgattgcaatgggagcacaagcccagaatgctcctgaactgcaacaa
aagataaccatcggatttaaagatactgaggtggtcagtgctataaatcagataaaatca
aaaacctctgttaagatctctttcaacagcaacgatcttaccaatgcaggaaaagtaact
attgtttccaaagaacgaactgttgaagaattacttaatgagatcgtcaaacaaactaac
cttgaaatcaagtatgacaaggatatcgttatgctccgtccgcagaccaaggcatcggga
aacgacccaaaggacaatataaacataaagggaaaagtagtgtcagatcagggcgaggaa
cttcccggcgttaatatatctgtcaagaacaccggcattggcaccagcaccaacggaaat
ggagagtttacgctgaatcatgttccgtcaaatgcaaccattattgcttcttttattggt
tttgaaactcaggaagttgcagtaaacggacgtaaagagcttgtgatcaagttaaaaacc
gaagcaaaaggacttgaagaagtagttgtagtaggttatggtacacaacgcaaacgcgat
gttgtaggtgcagtttcaagtgttaatgttaaaaacatggaaaaactcactggcggcgat
gtgggtaccatgcttcagggacaagcagcaggtgttatggtggcaccaggttccggagat
cccggcgctgctcctattatcagagttcgcggattaagtacgatcggaaacaatgatcct
ttgtatgtgatcgatggtattccgggtgatatcaattctgtaaatccgaatgatattcaa
tcgattgatgtacttaaagatgcctctgcagctactatttacggttcaagagcttcaaac
ggtgtaatccaggtaactaccaagcgaggcacagacggaaaaataaaagtcaatgtcaat
tcttactatggagtaaaccagctttcaaaacgtttacccattaccaaccagtcgcaatac
aatcagatcatgttgcagacgcaaaagaatgatggagaagccccacttgattacactgca
agcaatacttatgtagatggcaacggtcaaacacaagcttacccgaataccgactggcag
gatgaattttttcaggccgcaccggaaagcaaaatcgatttaagtctttcgggcgggtca
aaggatcttaaaatgaatgtatcattgggcagatacgatcagaaaggtattgtaatcaac
actaattttcagaaatataacgtacaggtaaacacagatatcaccaaaggaaaattcaaa
tttggcgagtcgatgacttttctttcatcagaccgacgcatgctggaaggttctaatgaa
agtaccgcaaaccaacaaaatgcaggttatccgttaatctatgaaatgattaaccgtgtt
cctcagtttcctgtatacaattctgaaaatgacggtggtttcggaggcagaatcggaaca
gaaatgatcgatgccaccaatccggtaggtattcagacgttggtagacaattcggagcaa
cgtacctcattaatagggaatatttatggtgaatatcaaatccttcaaccattatcattc
cgtttgcaatatggtattaatctcgacgacagctatgcctattcgcatattcctacttat
tacatgggtgcaaaagttcaaaaccctaatgcccagttatatgaaggaagaagtaaatac
aatcgcagcatcttgaatgctgtgttaactttcaataaaacatttaataatgttcatgcg
ctgaatgctcttgcaggatattctcaggaaagcgatcgcctgcgttcactatcaggcagt
aataatgacctgccatcaaacgatctgtgggcattaaattcgggtttgggagataaatct
tctggaggtacactggttgaaagctcactgatttcatggtttgcaagagccaattatgcc
tacaatgacaagtatttactggcagcaactgtccgtgttgacggatcctcacgctttgca
ccaagctacaagtatggaactttttattcgttttcaggagcatggagagttagcagcgaa
aaattcttccaatcatcagtaattaacgacctgaagatccgtgccggttacggaacttta
ggaaatcagagcattccaaattatcaatacctgcctcctgttattaatgcaggtaatgat
gcagtgaactatcctttaggaaccggaattcgccagaaaatctttactggcggtattgta
acttctgcttcagcccctgatattaaatgggaagaatcagccacttttaacgccggagtg
gatctttcagtgttgaatgaaaaactaacatttgtagttgacgtatttaaaacccgcacc
agcgacatgttggttacagttccgcttcctttaagtggaggtctgttgtttaatccatac
aaaaatgcagctgaaatggagaacaagggtattgacatggctctttcatacagaggcact
gcaggaaaactaaaatttgacgtaaccggaaactttaccttgaaccgcaacaaggtgact
aaacttggtttcgcaggtgaatctttcactgacggttatatggatttcaacaacttccct
actaccagaacagaagtaggtggagaaatcggacgattctatttatataaaacggcagga
gtaattaaaacccaacaagatttagatgctgttaaagcctatcagcctaatgcccagctt
ggtgatgtgaaatttgttgataccaatggcgatggcgaattaaatgatgacgatcgcatc
tttatgggaagtggtttacctaagttcgaatacggcctaaccgcaaacttaagtttggga
cgtttcgatatgagcatgctatttcagggtgcacagggtaacaaaatttacaacggtgca
aaacgcctgatgtatcagaataccattcataataagtctacagatttgctagatgcatgg
actccggaaaaccctaattcagatattccacgtactacagttcaggacccaaatggcaac
aacagccttccttctgatcgtttccttgaaaatggttcttacttccgtttaaaaagcatc
cagatcggatataaggttaagctgccacaactgaatagtcttagaatatatgccggagct
actaatgtgtttaccattactaaatacacaggttatgatccgggaattgttaattattcg
acgtttgcccgtggagttgacagaggtctctatcctctttcacggagcttcttcgcaggt
ttatcattcgacttttaa
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