Solitalea canadensis: Solca_1909
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Entry
Solca_1909 CDS
T02084
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
scn
Solitalea canadensis
Pathway
scn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Solca_1909
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scn03019
]
Solca_1909
03400 DNA repair and recombination proteins [BR:
scn03400
]
Solca_1909
Enzymes [BR:
scn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Solca_1909
Messenger RNA biogenesis [BR:
scn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Solca_1909
DNA repair and recombination proteins [BR:
scn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Solca_1909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AFD06969
UniProt:
H8KQU8
LinkDB
All DBs
Position
complement(2265576..2267765)
Genome browser
AA seq
729 aa
AA seq
DB search
MEVKKSLFDNLQNFFGFEKFKGEQEEIITSILSGNDTFVIMPTGGGKSMCYQLPALMSDG
TAIVISPLIALMKNQVDQLRAFGSTDSIAHFLNSSLNKTETAKVKQDVLSGETKLLYVAP
ESLSKQENIDFLRDIDISFVAVDEAHCISEWGHDFRPEYRKIRQIIGQLGENIPIIALTA
TATPKVQQDIQKNLQMQNSQVFKSSFNRPNLFYEIRPKKNELKEIIKYIKSQNGKAGIIY
CLSRKKVEEVAETLNVNGIKALPYHAGLDANTRATTQDKFLMEDVQVIVATIAFGMGIDK
PDVRFVIHYDMPKSMEGYYQETGRAGRDGGEGNCIAFYDQKDIDKLAKFMKDKPVSEREI
GTQILKEVIDYAESSVCRRKQILHYFGESYNESSCSNMCDNCRSPKERFEAEADLLAVLR
LINTLGENFDAEHIINILAGLEDAEMNTFSHDEMPEFGSGKDRGVVIWKSVLRQAVIHNF
LGKDIDSYGILKLTKYGKSFIDAPYSIKFIINTDFDKIKASDDDEVKGGGGALDDVLLGM
LKDLRKKIAKQKNIPPFVIFQDPSLEEMASQYPINMDELKQISGVGNGKAMRYGAPFIEL
IKKYVEENDIDRPQDMVVKSTVNKSSLKVSIIQNIDRQIPLDDIASSKGLGMPALIQEIE
SIVSSGTKLNLNYYIDDVIDEDKQDEVFDYFRTAEEDSIDLALAELGEGDYSREEIQLMR
IKFLSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaggttaaaaagtcgctgtttgataacttgcagaatttttttgggtttgaaaaattt
aaaggagagcaagaagaaatcataaccagcatactttcggggaatgatacatttgtaatt
atgcccacaggtggcggaaaatcaatgtgttaccaattacccgctttaatgagtgatggt
acggccatcgttatttcgccattgatagccttgatgaaaaatcaggttgatcagttacgt
gccttcggtagtactgacagtatcgcacattttcttaattcatctttaaacaaaactgaa
acagcaaaagttaaacaggatgttctgtccggcgaaactaagttgttatacgtagctccg
gagtctctttcgaagcaagaaaatattgatttcttaagagatatcgatatttctttcgtt
gctgttgatgaagcccactgtatttcagaatggggacatgatttcaggcctgaatacaga
aaaatacgtcagattattggtcagttaggtgaaaatatcccaattattgcgctaacggct
accgcaacacccaaggttcaacaggatattcagaagaacctgcaaatgcaaaattctcag
gttttcaaatcgtcctttaatcgaccgaatttattttatgagattcgccctaaaaagaat
gaattaaaggagattatcaagtatatcaaatcgcaaaatggtaaggctggaattatttat
tgtttaagccgcaagaaggttgaagaggttgctgaaacattaaatgttaatggtattaaa
gcgttaccttaccatgctggtttggatgctaatacgagagcgacaacacaagataagttc
ttgatggaagacgttcaggttattgtggctaccattgcatttggtatgggtatcgataaa
ccggatgtgcgttttgtgatccactacgacatgcctaaaagcatggagggctattatcag
gaaactggccgtgccggtcgtgatggaggtgaaggtaattgtattgctttttacgaccag
aaagacatcgacaagctggctaaattcatgaaagataagcctgtttcggaacgggaaatc
ggaactcaaattttgaaagaagtaatcgattatgcagagtcttctgtatgtcggaggaag
caaattcttcattattttggtgagagctacaatgaaagcagttgttctaatatgtgtgat
aactgtcgtagcccgaaagagcgttttgaagccgaggctgatttacttgcggtattaagg
ttaattaatacgctaggtgaaaactttgatgcagagcatattataaacattttggcagga
ttggaagatgctgaaatgaacacctttagccacgatgaaatgcctgaatttggcagtgga
aaagacaggggagtggtaatatggaagtcagttttgcgccaggctgttattcataatttc
cttggaaaggatattgacagttatggtattctgaaattaacgaaatacggaaaatcattt
attgatgctccttattctattaaattcatcattaacacagattttgataagatcaaagct
tctgatgatgatgaggtaaaaggtggaggtggtgcgcttgatgatgttttgctgggcatg
ttaaaagacttgcgtaaaaaaattgcgaaacaaaaaaatattcctcctttcgttattttc
caggatccttcgcttgaagaaatggcaagtcagtatcccattaatatggatgaactcaag
cagatttcaggtgttggtaatggtaaggccatgcgttatggtgctccgtttatcgaattg
atcaagaaatatgtagaggagaacgatatcgaccgcccacaagatatggttgttaagtca
accgttaataaatcaagtctgaaggtttccattattcaaaacattgacaggcaaattccg
ttagatgatatagcttcttctaaaggattgggcatgcctgcgcttattcaggaaatagaa
agtattgtttcttcgggtacgaagctaaacctgaactattatattgatgatgtaatagat
gaggataagcaggatgaagtatttgattatttcagaaccgcagaagaagattcgatagat
ctggcgttagccgaacttggagaaggtgattattcgagagaggaaattcagttgatgaga
attaaatttttatcagagctgggtaattga
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