Solitalea canadensis: Solca_2567
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Entry
Solca_2567 CDS
T02084
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
scn
Solitalea canadensis
Pathway
scn02020
Two-component system
scn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Solca_2567
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Solca_2567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scn03021
]
Solca_2567
Transcription machinery [BR:
scn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Solca_2567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
LacI
HTH_12
DUF4158
MarR
HTH_IclR
NES_C_h
Tma16
PRKG1_interact
Motif
Other DBs
NCBI-ProteinID:
AFD07601
UniProt:
H8KRM0
LinkDB
All DBs
Position
complement(3046603..3048081)
Genome browser
AA seq
492 aa
AA seq
DB search
MLKQNLQQKLLQKLSPQQLQFIKLLQIPTVMLDTRIKEELEENPALEDVSLISHNEEKDE
YNFDDDNSDDYNESENESSSEEFSIEDYLQDDGEKDYATSLAYDGEDEDDKKELPYAESR
SFFELLQFQLSLVELEDRNFLIAQQIIGSLDDDGYLRRPIISLTDDLAFSQNIDATEEEI
EAMLKIIQSFDPPGIGARDLQECLLIQLRKKDQDNRIVHLATEIVENYLDEFTKKHYEKL
ERSLNISSEELKMAVNEILKLNPKPGDSNADGNSKQMQVIPDFHIANNDGVLVLTLNSRN
APELRVSRDYKEMFQTYDKQTNKDKKLKEAVQFVKQKLDSAKWFIDAIKQRQQTLIKTMN
AIMHYQYDYFLEGDERKLKPMILKDIADQIGMDISTVSRVANSKYVQTEFGTFLLKSFFS
EAIQTESGEEVSNREVKKILEDCIGNEDKRRPLADEKLAEILKDKGYNIARRTVAKYREQ
MNIPVARLRKEL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgctaaaacagaacctacagcaaaagttattacagaaattatcgccgcaacagctacaa
tttattaagcttttgcagataccaactgtgatgcttgacacgagaattaaggaggagtta
gaggaaaaccctgctttagaggatgttagcttaatttcgcataacgaagaaaaggacgaa
tacaattttgatgatgataatagtgatgattataacgaatctgaaaatgaatcgtcatca
gaagagtttagtatagaagattatttgcaagatgacggtgaaaaggattacgccacctct
ttagcttatgacggagaggatgaggatgataaaaaagagctgccttatgcagaaagtcgt
tctttctttgaattacttcagttccaattaagtttagtagagctggaagatcgtaatttt
ctgatcgcacagcaaataattggtagtctggatgacgacggttatttgcgtcgcccgatt
atttcactgacagatgatcttgctttttctcaaaatattgatgccactgaagaagagatt
gaggcaatgctgaaaatcattcaaagttttgatccaccaggtatcggtgcccgtgatctg
caagaatgtttattaatccagttgcgaaagaaagatcaggataatcgaatcgtacatctt
gcaaccgagattgtagaaaattaccttgatgagtttaccaagaagcattacgaaaaactg
gaacggtcattaaatatttcttcagaagaattaaaaatggctgttaatgagattctgaag
ttaaatccaaaaccaggtgattcaaatgccgacgggaactcaaagcaaatgcaagttatt
cctgattttcatatagcaaacaacgacggagtacttgtactaaccctaaattcaagaaat
gctcccgaattgcgcgtaagtcgtgattataaggaaatgtttcagacctacgataagcaa
accaataaagataaaaagctgaaagaagccgtacagtttgtaaaacaaaaacttgattca
gcaaaatggtttattgatgcaataaagcagcgtcagcaaacactcatcaaaacgatgaat
gctattatgcattatcaatatgattattttctggaaggggatgagcgtaaactgaagcca
atgattttgaaagatattgctgatcagatcggaatggatatttcaaccgtttcgcgtgtg
gctaacagcaagtatgttcaaactgaatttggtacctttttgttaaaatcatttttctca
gaagcaatacaaactgaaagtggggaagaggtttctaaccgtgaggtaaagaaaattttg
gaagattgcattggcaatgaggataagcgccgtccattggctgatgagaaactggcagaa
atcttaaaagataaaggatataatattgctcgtagaacggtggcgaaataccgggagcaa
atgaacattccggtagccaggttacgaaaagaattataa
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