Solitalea canadensis: Solca_2948
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Entry
Solca_2948 CDS
T02084
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scn
Solitalea canadensis
Pathway
scn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Solca_2948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scn03019
]
Solca_2948
Enzymes [BR:
scn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Solca_2948
Messenger RNA biogenesis [BR:
scn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Solca_2948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_22
Cas3-like_C_2
HEM4
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AFD07967
UniProt:
H8KNG9
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All DBs
Position
3484351..3485673
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AA seq
440 aa
AA seq
DB search
MTFNELNLIDPILKALQSEGYTQPTPIQEQSIPVALKGQDLLGCAQTGTGKTAAFTIPIL
QLLHPIVRHEQGTTPIRALILTPTRELAIQIGESIAAYGKNLKLKHLVIFGGVNQLNQTV
ALSKGVDILVATPGRLLDLMNQKFIHLHKVQFFVLDEADRMLDMGFVNDVKRVIAKLPEK
RQTLFFSATMPPVIQQLADSILSKPVKVEVTPVSSTAETINQSVYMVDKGNKRALLTHLL
ENDGIGSALVFTKTKHGADRIARDLNKHKIKAEAIHGDKSQNARQRALSNFKSKDIRILV
ATDIAARGIDIDDLLHVINFDIPYEAETYVHRIGRTGRAGASGTALTFCDPEEMTYLKDI
VKLIGKSIPTVEDHPFPMTIQRYLEVQQQATDKKNDNRGSKRGFSHNKNRGGGQGHSSKK
QQHRKGQSKSTSASKGGPKR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaacgaattaaatttaatagaccccatattaaaagccctgcaatcagaaggt
tatacacaacccacccctattcaggaacaatcaatcccagttgccctaaaaggccaggat
ttattgggttgcgcacaaaccggaaccggtaaaacagcggcctttaccattcccatttta
caattattacatccgattgttcgtcacgaacaaggaacaactccaataagagcccttatt
cttacgccaactcgtgagttagccattcaaataggagaaagcattgcagcctacgggaaa
aatctgaagcttaaacacctggttatctttggaggcgttaatcaactaaaccaaacggta
gcgctaagcaaaggagtagatattttggtagcaactccaggacgtctgcttgatctgatg
aaccaaaaattcattcatttacataaggttcaattctttgtactagatgaagccgaccgt
atgctcgatatgggctttgtgaatgatgtgaaaagggtgattgccaaattgcctgaaaaa
cgtcagacactattcttctcagctactatgcctcccgttatccaacaattggccgacagc
attttaagtaagcctgttaaggttgaagtaactccggtgtcatcaactgcagaaaccatt
aatcagtctgtttacatggttgataaaggcaataaacgcgcattattgacccatttacta
gaaaacgatggaattggttctgcattagtctttaccaaaactaaacatggcgcggatcgt
attgctcgtgacctcaacaagcacaagatcaaagccgaagctattcatggtgacaaatcg
cagaacgcacgtcaacgcgccctaagcaactttaaatcaaaagatatccggatattggta
gccacagatattgctgccagaggaattgacattgatgacctgttacatgtgatcaatttt
gatattccttacgaagcagaaacatatgtgcatcgtattggccgtacaggaagagccgga
gccagcggaacagctttaaccttttgtgatccggaggaaatgacctacctgaaagatatt
gttaaactgataggtaagtctattcctactgtggaagatcatccttttccaatgactatt
caacgttacctggaggttcaacaacaagcaaccgacaagaaaaacgataatcgaggaagt
aaaagaggattttctcataataaaaaccgcggaggaggtcagggacatagcagtaaaaaa
cagcaacaccgaaaaggtcagtcaaaatccacctcggcatctaaaggaggtccaaaaaga
taa
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