Solitalea canadensis: Solca_4406
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Entry
Solca_4406 CDS
T02084
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
scn
Solitalea canadensis
Pathway
scn03410
Base excision repair
scn03430
Mismatch repair
scn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
scn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Solca_4406
03430 Mismatch repair
Solca_4406
03440 Homologous recombination
Solca_4406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scn03400
]
Solca_4406
DNA repair and recombination proteins [BR:
scn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Solca_4406
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Solca_4406
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Solca_4406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
AFD09396
UniProt:
H8KN63
LinkDB
All DBs
Position
complement(5109289..5110989)
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AA seq
566 aa
AA seq
DB search
MDKRWITHSDYKNDVVDLLSQELNVSPIIAKLLERRGIVDFDSAKDFFRPDIRHLHDPFL
MLDMEKAIDRIEEAIKNQEKILIYGDYDVDGTTSVSLVYSFFKKFYNNLSYYIPDRYKEG
YGISTKGIDWAEENNHSLIIALDCGIKSVDKIDYANEKGIDFIICDHHLPGDEVPYAIAV
LDPKRHDCEYPYKELSGCGIGFKLIQAFAEKNNMPFTYLEPFLDLVAVSIASDIVPITGE
NRTLAFYGLKRINENPCEGLKALIDLSAQKEAITITDIVFQIGPRINAAGRIDDAKHAVH
LLISGSSELATEKGQLVNLKNTERKEFDNSITGEALAMLESDPSQQTRKSTVLFSPTWHK
GVIGIVASRLIEKYYRPTIILTESNGKATGSARSVNGFDIHEAISACSDLLEQYGGHKYA
AGLTIPLENITAFINKFEEVVASTIEERSLSQEIEIDEYVKLNTIEPKLVRIIKQFAPFG
PGNMKPTFASKNVWCKGEPQVVGNNHLKFTVQQSEGYFFDCIGFNLGQHYQRIRKGIPFD
ICYSIEENTWNGKTTIQLNVKDIKFE
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaggtggattacacattcggattataaaaatgacgtggtggacttgttgtcg
caggaactgaatgtttcacccattatcgctaaactactcgaaagacgtggtatcgttgat
tttgatagtgccaaagatttttttcgccctgatataagacatctacatgatcccttcctg
atgcttgacatggaaaaagcgatcgaccggattgaagaagcaataaaaaatcaagaaaag
atccttatttacggagattatgatgtagatggaactacttcagtttcgctggtttacagt
ttctttaaaaagttttacaataatcttagttactatatccccgacaggtataaagagggc
tatggtatttcaactaaaggcattgactgggctgaggaaaacaaccattcgttaattatt
gcgcttgattgcggcattaaatctgttgataagattgattacgcaaatgaaaaaggaatt
gattttattatttgtgatcaccatttaccaggcgatgaggttccttacgctatagctgtt
cttgatcccaaaagacatgattgtgaatatccctataaggagctttccggttgtggaatc
ggctttaaactcattcaggcatttgcagaaaaaaacaatatgccgtttacttacctcgaa
ccctttctcgatctggttgcggtcagtattgcctctgatattgttcctattaccggagaa
aacagaacgcttgctttttatgggctgaaaagaattaatgaaaacccctgtgaaggatta
aaagcattaatagacctttccgctcaaaaagaagcaataacaataactgacattgttttt
cagattggacctcgaattaatgccgccggtcgtattgatgatgctaaacatgcggtgcat
ttattaatttcaggttcatcagaattggccactgaaaaaggacagctggttaatcttaaa
aacaccgaacgcaaggagtttgataacagtattacaggtgaagcattggcaatgctggaa
tccgacccaagtcagcagactcgtaaatcaacagttttattttctcctacctggcataag
ggagttatcggtatcgttgcttcgcgactgattgaaaaatattatcgtcctaccatcatt
cttactgagtcaaacggcaaagccacaggttctgcccgctctgttaacggatttgatatt
catgaagcgataagtgcttgcagtgatcttttggaacagtatggtggacataaatatgct
gcggggcttaccattcctcttgagaatataacggcatttatcaataagttcgaagaagtt
gttgcatcaaccattgaagaacgttcgctttctcaggaaattgaaattgatgaatacgta
aaattaaataccattgaacctaaattagtacggattattaagcaatttgccccttttgga
ccgggcaatatgaagcctacttttgcctcaaaaaatgtatggtgtaaaggggagccgcaa
gtggtgggaaataatcacttgaagtttaccgttcaacaatcagaaggttatttttttgat
tgcataggttttaatttaggccagcattatcaacgcataagaaaaggtattccatttgat
atttgttacagtattgaggagaatacctggaatggaaaaaccaccattcaattaaatgtt
aaagacataaaatttgaataa
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