Streptomyces coelicolor: SCO4092
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Entry
SCO4092 CDS
T00085
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sco
Streptomyces coelicolor
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sco03019
]
SCO4092 (hrpA)
Enzymes [BR:
sco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SCO4092 (hrpA)
Messenger RNA biogenesis [BR:
sco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SCO4092 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
SLFN-g3_helicase
nSTAND3
T2SSE
NACHT
AAA_30
AAA_16
TsaE
PhoH
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CAB56372
Kitasato:
SCO4092
UniProt:
Q9RKJ4
LinkDB
All DBs
Position
complement(4486639..4490622)
Genome browser
AA seq
1327 aa
AA seq
DB search
MSTHPAPALGTLAPRLTELSLRDAHRLGRRLEGARKIRKPEARAAVLAEIETEVAKAEQR
IGERRARVPAVSYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICVELGRG
VRGMIGHTQPRRIAARTVAERVADELDTPLGETVGWKVRFTDQVNPESTFIKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDGDDADRDQITAITDAVEELMGEGKGDILVFLS
GEREIRDTADALEKKKYRFTEVLPLYARLSHAEQHRVFQQHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFT
ARPEFTDAEILRTNLASVILQMTAAGLGEIEKFPFIDPPDHRNIRDGVQLLQELGALDPA
QKDVRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPAEKQ
AQADQQHARFKDESSDFLAFLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGIHLNDEEHPAPDDRVHVSLLAGLLSHVGMKDVKDAGGEGGRNTGKNEYL
GARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPLAGHLLKRTYS
EPHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEISRELFIRNALVEGDWRTHHKF
FADNRRLLTEVEELEHRARRRDILVDDETLYDFYDQRVPEHVVSGAHFDSWWKHKRHEQP
DFLDFEREMLINEKAGAVTKDDYPDSWRQGPLKFRVTYQFEPGADADGVTVHVPLQVLNQ
VSDEGFDWQIPGLREQVVTELIRSLPKPVRRNYVPAPNYAQAFLDRAVPLQEPLTVTMAR
ELKRMVGVPFDAEDFDWSKVPDHLKITFRIVDERRRKLAEDKDLEALKLRLRPKARKALS
QAAAATAERSGGESLERSGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGSKADTVSVR
LFDTEAEQAQAMWRGTRRLILRNIPVNPAKFASEKLTNQQKLGLSANPHGSIQALFDDCA
TAAADKLIADFGGPAWDEESYRKLYDRVRAEIVDTTVRTVGQVQQVLAAWQACERRLKAV
RSPALLANLQDVRGQLDALVKPGFVTEAGIKRLPDLMRYLVAADRRLQQMPTGVQRDTSR
MEKVHEMRDEYAWLLEQMPQGRPVPRQVLEVRWMIEELRVSYFAHALGTAYPVSDKRIVK
AIDALAP
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcctgcccccgccctcggcaccctcgccccccggctgaccgagctgtcg
ctgcgcgacgcgcaccggctcggccgcaggctggagggtgcgcggaagatccgcaagccg
gaggcccgcgccgccgtcctcgccgagatcgagacggaggtggccaaggccgaacagcgc
atcggcgaacgccgggcgcgggttccggccgtcagctaccccgagcagctcccggtcagc
cagaagaaggacgagatcgcggcggccatccgcgatcaccaggtcgtgatcgtcgccggt
gagacggggtccggcaagaccacccagatcccgaagatctgtgtcgagctgggccgtggt
gtccgcggcatgatcgggcacacccagccccgccggatcgccgcgcgcaccgtcgccgag
cgggtcgcggacgagctggacaccccgctcggggagaccgtcggctggaaggtgcggttc
accgaccaggtgaacccggagtccaccttcatcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgacgaggcc
cacgagcggtccctcaacatcgacttcctgctgggctacctcgcccagctgctgcccaag
cggccggacctgaaggtcgtcatcacctcggcgaccatcgacccggagcgcttctcgcgc
catttcggcgacgccccgatcgtcgaggtcagcggacgcacctatcccgtggaggtgcgc
taccggccactcctcgaggaggacggcgacgacgccgaccgcgaccagatcacggccatc
accgacgccgtcgaggagctgatgggcgagggcaagggcgacatcctcgtcttcctctcc
ggcgagcgcgagatccgggacacggccgacgcgctggagaagaagaagtacagattcacc
gaggtactgccgctgtacgcgcggctctcgcacgccgagcagcaccgcgtcttccagcag
cacaccgggcgccggatcgtcctggcgaccaacgtcgccgagacctccctcaccgtgccg
ggcatcaagtacgtcatcgaccccggcttcgcccgcatctcccgctacagccaccgcacc
aaggtccagcggctgcccatcgagccggtctcgcaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtccgacggcatctgcatccggctgtactccgaggacgacttcacc
gcgcgccccgagttcacggacgcggagatcctccggaccaacctcgcctccgtcatcctc
cagatgaccgcggccggcctcggcgagatcgagaagttcccgttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagctcctccaggagctgggcgcactcgacccggcg
cagaaggacgtacgcaagcggctgaccgacaccggccgcaagctcgcccagctgcccgtc
gacccgcggctggcccgaatggtgctggaggcggacaagaacggctgtgtccgcgaggtc
atggtcatagccgccgcgctgtcgatccaggacccgcgggagcgcccggcggagaagcag
gcccaggccgaccagcagcacgcccggttcaaggacgagagcagcgacttcctcgccttc
ctgaacctctggcgctatgtccgcgagcagcagaaggagcgcggctcgtcgtccttccgc
cggatgtgcaagcaggagtacctcaacttcctgcgcatccgcgagtggcaggacatctac
acgcagctgcgcacggtcgccaagcagatgggcatccacctcaacgacgaggagcacccc
gcacccgacgaccgcgtccacgtgtccctgctggccggactgctgtcccacgtcgggatg
aaggacgtcaaggacgccggaggggagggcgggaggaacaccgggaagaacgagtacctg
ggcgcgcgcaacgccaagttcgcgatcttcccgggctccgcgctcttcaagaagcccccg
cggttcgtgatgtcggcggagctggtggagacctcccggctctgggcccgcgtcaacgcg
aagatcgagcccgagtgggtggagccgctcgccgggcacctcctcaagcgcacctacagc
gaaccgcactgggagaaggaccaggcggcggtgatggcgtacgagaaggtcacgctgtac
ggcgtaccgatcgtggcgcagcgcaaggtgaactacgggcggatcgatccggagatcagc
cgcgagctgttcatccgcaacgccctggtggagggcgactggcgcacccaccacaagttc
ttcgccgacaaccgcaggctcctgaccgaggtcgaggagctggagcaccgggcgcggcgc
cgggacatcctggtcgacgacgagacgctgtacgacttctacgaccagcgggtgcccgaa
cacgtcgtctccggtgcgcacttcgactcgtggtggaagcacaagcggcacgagcagccc
gacttcctcgacttcgagcgcgagatgctcatcaacgagaaggcgggggcggtcaccaag
gacgactatccggactcctggcggcaggggccgctgaagttccgggtgacgtaccagttc
gagccgggcgcggacgccgacggtgtgaccgtgcacgtgccgctccaggtgctcaaccag
gtctcggacgagggcttcgactggcagatcccgggcctgcgcgagcaggtcgtcacggag
ctgatccgctccctgcccaagccggtccgccgcaactacgtacccgcgccgaactacgcc
caggcgttcctggaccgtgccgtgccccttcaggagccgctgacggtgaccatggcgcgg
gagctgaagcgcatggtgggggtgccgttcgacgcggaggacttcgactggtcgaaggtc
cccgaccatctgaagatcacgttccggatcgtcgacgagcggcgccgcaagctggccgag
gacaaggacctggaggcgctgaagctccggctgcgcccgaaggcgcgcaaggcgttgtcg
caggccgcggcggccacggcggaacgcagcggcggcgagtccctggagcgctccgggctg
acggactggacgatcggcacgctgacccgggtcttcgagacccgccgggccggtcagccg
gtgaaggcgtacccggcgctggtggacgacgggtccaaggcggacaccgtctccgtccgc
ctcttcgacaccgaggccgagcaggcgcaggcgatgtggaggggcacgcggcggctgatc
ctgcgcaacatcccggtcaaccccgcgaagttcgcgtccgaaaagctgaccaaccagcag
aagctgggcctgtccgcgaatccgcacggttcgatccaggccctgttcgacgactgcgcc
acggcggcggcggacaagctgatcgcggacttcggcggcccggcctgggacgaggagtcg
taccgcaagctctacgacagggtccgcgcggagatcgtcgacacgaccgtccgtacggtg
gggcaggtgcagcaggtgctggcggcctggcaggcctgtgagcgccgcctgaaggcggta
cgcagcccggcgctgctggccaacctccaggacgtacggggacagctggacgcgctggtg
aagcccggcttcgtcacggaggccgggatcaagcgactgccggacctgatgcgctacctg
gtcgccgcggaccgccggctgcagcagatgccgaccggcgtgcagcgggacacgtcccgc
atggagaaggtccacgagatgcgggacgaatacgcgtggctcctcgagcagatgccgcag
gggcggccggtgccccggcaggtcctggaggtccgctggatgatcgaggagctgcgggtc
agctatttcgcccacgcgctgggcacggcctaccccgtctccgacaagcggatcgtgaag
gccatcgacgccctcgcaccgtga
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