Streptomyces coelicolor: SCO4577
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Entry
SCO4577 CDS
T00085
Symbol
SCD16A.06c
Name
(GenBank) putative helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sco
Streptomyces coelicolor
Pathway
sco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCO4577 (SCD16A.06c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sco03019
]
SCO4577 (SCD16A.06c)
03400 DNA repair and recombination proteins [BR:
sco03400
]
SCO4577 (SCD16A.06c)
Enzymes [BR:
sco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SCO4577 (SCD16A.06c)
Messenger RNA biogenesis [BR:
sco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SCO4577 (SCD16A.06c)
DNA repair and recombination proteins [BR:
sco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SCO4577 (SCD16A.06c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
CAB44516
Kitasato:
SCO4577
UniProt:
Q9XAR9
LinkDB
All DBs
Position
4997397..4999427
Genome browser
AA seq
676 aa
AA seq
DB search
MGGTGVIGEMAETAQVRDGDSEALATLHRVFGYDAFRGEQEAIVEHVIAGGDAVVLMPTG
GGKSLCYQIPSLVRPGTGIVVSPLIALMQDQVDALRALGVRAGFMNSTQDFDERRVTEAE
FLAGELDLLYLAPERLRLDSTLDLLSRGKISLFAIDEAHCVSQWGHDFRPDYLALSLLGE
RWPDVPRLALTATATDATHREITERLHMPAARHFVASFDRPNIQYRVVPKSDPKKQLLSF
LREEHPGDAGIVYCLSRNSVDKTAEFLSRNGVEAVPYHAGLDAGTRAAHQSRFLREEGLV
VVATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPSTAWMAYGLNDVIQQR
KLIQSGEGDEAFRRRAQSHLDAMLALCETARCRRGQLLAYFGQDPDGSACGNCDTCLTPP
ETWDGTVAAQKVLSTVVRLKRERGQKFGAGQIIDILLGKRTAKVIQFDHDQLSVFGIGEE
LTEGEWRGVARQLLAQGLLAVEGEYGTLVLTDTSGEVLRREREVPLRKEPKKPAAAKSAG
GGRGERKAKAAAAELPAELVPAFEALRAWRAEQAREQGVPAYVIFHDATLREIVTVWPTS
VGQLGGISGVGEKKLATYGEGVVEALAGLEGPGSAPASAPAPAPAPSDGPGTGSGAKAGA
VDWPEHEPEPEPDDWI
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggacgggcgtgatcggcgagatggcagagacggcgcaggtgagggacggggac
agcgaggcgctggccaccctgcaccgggtcttcgggtacgacgccttccgcggcgagcag
gaggcgatcgtcgagcacgtgatcgccggcggcgacgccgtggtgctcatgcccaccggc
ggcggaaagtccctgtgctaccagattccgtccctggtcaggccgggtaccggcatagtg
gtctcgccgctgatcgcgctcatgcaggaccaggtcgacgcgctgcgggcgctcggcgtg
cgggccgggttcatgaactccacgcaggacttcgacgagcggcgcgtgaccgaggccgag
ttcctcgccggggagctggacctgctgtacctggctcccgagcggctgcgcctggacagc
accctcgacctgctctcccgcggcaagatctccctcttcgccatcgacgaggcgcactgc
gtctcgcagtgggggcacgacttccggcccgactacctcgccctgtcgctgctgggcgag
cgctggccggacgtgccccggctcgcgctcacggcgacggccaccgacgccacccaccgc
gagatcaccgagcggctgcacatgccggcggcgcggcacttcgtggccagcttcgaccgc
cccaacatccagtaccgggtcgtgccgaagtccgatcccaagaagcagctgctgagcttc
ctgcgggaggagcacccgggcgacgcgggcatcgtgtactgcctctcgcgcaactcggtc
gacaagaccgccgagttcctgtcgcgcaacggtgtcgaggcggtgccgtaccacgcgggt
ctggacgcgggcacccgcgcggcgcaccagtcgcggttcctgcgcgaggagggcctggtg
gtcgtggccaccatcgccttcggcatgggcatcgacaagccggacgtgcggttcgtcgcc
cacctcgacctgccgaagtcggtcgagggctactaccaggagaccggccgtgcggggcgg
gacggcctgccctccacggcctggatggcgtacggcctcaacgacgtcatacagcagcgc
aagctcatccagtccggcgagggcgacgaggcgttccgccgccgggcccagtcccacctg
gacgccatgctcgccctgtgcgagaccgcccggtgccgccggggtcagctcctcgcctac
ttcggccaggacccggacgggtccgcctgcggcaactgcgacacctgcctgaccccgccc
gagacctgggacggcacggtggcggcgcagaaggtgctgtcgacggtggtgcggctgaag
cgcgagcgcgggcagaagttcggcgccgggcagatcatcgacatcctgctgggcaagcgc
accgccaaggtcatccagttcgaccacgaccagctctccgtgttcggcatcggagaggag
ctgaccgagggcgagtggcggggcgtcgcccggcagctgctggcccagggcctgcttgcg
gtcgagggggagtacggcacgctggtgctgaccgacaccagcggtgaggtcctgcggcgg
gagcgggaggtgccgctgcgcaaggagcccaagaagcccgccgcggccaagtcggcgggc
ggcggacgcggcgagcgcaaggcgaaggcggccgcggccgagctgccggcggagctggtc
cccgccttcgaggcgctgcgcgcctggcgcgcggaacaggctcgagagcagggcgtcccg
gcgtacgtcatcttccacgacgccaccctgcgggagatcgtcaccgtgtggcccacctcg
gtcgggcagctcgggggcatcagcggggtcggcgagaagaagctggcgacgtacggcgag
ggcgtggtcgaggcgctggcggggctggagggaccgggttccgcccccgcgtccgccccg
gcgcccgcgcccgccccgtcggacggaccgggaaccggttcgggtgcgaaggccggcgcg
gtcgactggcccgagcacgagccggagcccgagcccgacgactggatatag
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