Streptomyces coelicolor: SCO4655
Help
Entry
SCO4655 CDS
T00085
Symbol
SCD82.27
Name
(GenBank) DNA-directed RNA polymerase beta' chain (fragment)
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sco
Streptomyces coelicolor
Pathway
sco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SCO4655 (SCD82.27)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sco03021
]
SCO4655 (SCD82.27)
03400 DNA repair and recombination proteins [BR:
sco03400
]
SCO4655 (SCD82.27)
Enzymes [BR:
sco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SCO4655 (SCD82.27)
Transcription machinery [BR:
sco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SCO4655 (SCD82.27)
DNA repair and recombination proteins [BR:
sco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SCO4655 (SCD82.27)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Orbi_VP1
TarH
Motif
Other DBs
NCBI-ProteinID:
CAD55212
Kitasato:
SCO4655
UniProt:
Q8CJT1
Structure
PDB
PDBj
LinkDB
All DBs
Position
5081644..5085543
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIEQRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDSEGRSPKGE
GRAFGSSAEAIMAFDAGDLTLQAKIDIRFPVGTIPPRGFEPPAREEGEPEWQQGDTFTLK
TTLGRALFNELLPEDYPFVDYEVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWAT
RSGVTVAISDIVVPDAKKEIVKGYEGQDEKVQKQYERGLITKEERTQELIAIWTKATNEV
AEAMNDNFPKTNPVSMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLPIATRD
ADGTLRKAEDVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVAHGVEEVKTRSIL
TCESQVGTCAMCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGSDETAFPISKRARL
LVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERTKFETENRRVVQEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgccgtgagcggatgggccacatcgagctggccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctgggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcaccttcgtggac
gaggagcgccgcacccgcgacctgccgtcgctggaggcccacgtctccgtcgagcgccag
cagatcgagcagcgccgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgagggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgcctcgac
gaggtgtggaaccggttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacctacttcgacggctcgatgggcgccgccgcg
ctccagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctggactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcg
ctcttcgacaacggccgccgcggccgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctgctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagccggccgacggccgtccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctcaccaccgactccgaggggcgcagccccaagggcgag
ggccgtgccttcggctcctccgccgaggcgatcatggccttcgacgccggagacctgacg
cttcaggcgaagatcgacatccgcttcccggtgggaaccatcccgccccgcggcttcgaa
cccccggcccgcgaggagggtgagccggagtggcagcagggtgacaccttcaccctgaag
accacgctgggccgtgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tacgaggtcggcaagaagcagctctccgagatcgtcaacgacctcgccgagcgctacccg
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttcttctgggccacc
cgttccggcgtcaccgtcgccatctccgacatcgtcgttcccgacgcgaagaaggagatc
gtcaagggctacgagggccaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggaagagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtc
gccgaggcgatgaacgacaacttcccgaagaccaacccggtctccatgatggtgaactcg
ggtgctcgcggaaacatgatgcagatgcgtcagatcgcgggtatgcgcggtctggtgtcg
aacgcgaagaacgagacgatcccgcgtcccatcaaggcctccttccgtgagggcctgtcc
gtgctggagtacttcatctccacgcacggtgcccgtaagggtctggcggacaccgcgctg
cggaccgccgactcgggttacctcacgcgtcgtctggtcgacgtctcccaggacgtcatc
attcgcgaggaggactgcggcaccgagcgcggtctcaagctgccgatcgccacgcgcgac
gcggacggcacgctgcgcaaggccgaggacgtcgagaccagcgtgtacgcccgcatgctc
gccgaggacgtcgtcatcgacggcaaggtgatcgcgccggccaacgtcgacctgggtgac
gtcctgatcgacgccctggtcgcccacggcgtcgaggaggtcaagacccgctcgatcctg
acctgtgagtcccaggtcggcacgtgcgccatgtgctacggccgctcgctggccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacccagctgacgatgcgtaccttccacaccggtggtgtggccggtgacgacatcacg
cagggtctgccgcgtgtcgtcgagctcttcgaggcccgtaccccgaagggtgtcgccccg
atctccgaggcctccggccgcgtccggatcgaggagaccgagaagaccaagaagatcgtc
gtcacccccgacgacggcagcgacgagacggcgttcccgatctcgaagcgtgcccgtctg
ctggtgggcgagggcgaccacgtcgaggtgggccagaagctcaccgtgggtgccaccaac
ccgcacgacgtgctgcgcatcctgggtcagcgtgccgtccaggtccacctggtcggcgag
gtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgccgagctgctgccc
ggcgagctggtcgagcggaccaagttcgagaccgagaaccgtcgtgtggtccaggagggc
ggtcacccggcctccggtcgtccgcagctgatgggtatcaccaaggcctcgctggcgacg
gaatcctggctgtcggccgcctccttccaggagacgacccgagtcctgacggacgcggcg
atcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggtctgtcccgctaccgcaacatccgggtggagccgaccgaggag
gccaaggccgcgatgtactcggccgtcggctacgacgacatcgactactcgccgttcggc
acgggctccggccaggccgttccgctggaggactacgactacggtccgtacaaccagtaa
DBGET
integrated database retrieval system
