Streptomyces coelicolor: SCO5357
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Entry
SCO5357 CDS
T00085
Symbol
SCBAC5H2.26
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sco
Streptomyces coelicolor
Pathway
sco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCO5357 (SCBAC5H2.26)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sco03021
]
SCO5357 (SCBAC5H2.26)
03019 Messenger RNA biogenesis [BR:
sco03019
]
SCO5357 (SCBAC5H2.26)
Transcription machinery [BR:
sco03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SCO5357 (SCBAC5H2.26)
Messenger RNA biogenesis [BR:
sco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCO5357 (SCBAC5H2.26)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
AAA_22
ResIII
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
CAD55351
Kitasato:
SCO5357
UniProt:
Q8CJR6
LinkDB
All DBs
Position
5826214..5828298
Genome browser
AA seq
694 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAAGGAPAKAAPAAADTAGETKPKRRSTSRTRTGDEAPAEKAEKA
GKADKKADKAAADKAAAQQQIEIPGQPSPKVNASAEQAAPADDAPSERRRRRATSDAGSP
SATDTTVAVETRAEPKADTSAPQQSQGHQQGQGDARSDAEGGDGRRRDRRDRGDRDRGDR
GERGRDRRNKGDDQQNQGGGRQDRQQQGGGRQDRQQHDDGYDDDGSGRRGRRGRYRDRRG
RRGRDEIQEPQINEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRK
GDHLTGAVRQPKEGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETD
PGVLTTRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERP
EEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRA
YNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFE
EFKGTGNAELKLDRKLADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQ
QAIELLLDKMKQTKSNAEFLMQIQKTTPTPGNGD
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagctgcagcaggtcgcatccggcctcggcatcaggggcacc
gcgcgtatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgcgggggga
gcccccgccaaggccgcgcccgccgccgcggacaccgccggcgagaccaagcccaagcgc
cgcagcacctcccggacccgtacgggcgacgaggcacccgccgagaaggcggagaaggcc
ggcaaggccgacaagaaggcggacaaggcggccgccgacaaggccgccgcccagcagcag
atcgagatccccggtcagccgtcccccaaggtcaacgcctcggccgagcaggccgcgccc
gccgacgacgccccctccgagcgccgtcgtcgccgggccacctccgacgcgggcagcccg
tccgccaccgacacgacggtggccgtcgagacccgcgccgagccgaaggccgacacgtcg
gccccgcagcagtcgcagggtcaccagcagggccagggcgacgcccgttccgacgccgag
ggcggcgacggccgccgccgcgaccgcagagaccgcggcgaccgcgaccgcggtgaccgt
ggcgagcgcggccgcgaccggcgcaacaagggcgacgaccagcagaaccagggcggcggt
cggcaggaccgccagcagcagggcggcggacgccaggaccgtcagcagcacgacgacggt
tacgacgacgacggcagcggccgtcggggccgccgcggccgctaccgggaccgccggggc
cgtcgcggacgcgacgagatccaggagccgcagatcaacgaggacgacgtcctcatcccg
gtcgccggcatcctcgacatccttgacaactacgcgttcatccggacctccggctacctg
cccggcccgaacgacgtgtacgtctccctcgcccaggtccgcaagaacggcctgcgcaag
ggcgaccacctcaccggtgccgtgcgccagcccaaggagggcgagcgccgcgagaagttc
aacgcgctggtgcgcctggactcggtcaacggcatggcccccgaacacggccgcggtcgc
ccggagttcaacaagctcaccccgctgtacccgcaggaccgcctccgtctggagacggac
ccgggcgtcctcaccacccgcatcatcgacctggtcgcgccgatcggtaaggggcagcgc
ggtctgatcgtggccccgccgaagaccggcaagaccatgatcatgcaggcgatcgccaac
gcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctggtcgacgagcgtccg
gaagaggtcaccgacatgcagcggtcggtgaagggcgaggtcatctcctcgaccttcgac
cgcccggccgaggaccacaccacggtcgccgagctggccatcgagcgcgccaagcgcctg
gtggagctgggccacgacgtcgtcgtgctgctcgactcgatcacgcgtctgggccgtgcg
tacaacctcgccgccccggcctccggccgcatcctgtccggtggtgtcgactcgaccgcc
ctgtacccgccgaagcgcttcttcggtgcggcccgcaacatcgaggacggcggttcgctg
accatcctcgccaccgccctggtggacaccgggtcccgcatggacgaggtcatcttcgag
gagttcaagggcaccggcaacgccgagctcaagctcgaccggaagctcgccgacaagcgc
atcttcccggcggtggacgtggacgcgtccggcacccgcaaggaagagatcctgctcggc
agcgacgaactcgccatcacctggaagctgcgccgtgtgctgcacgcgctcgaccagcag
caggcgatcgaactgctcctcgacaagatgaagcagacgaagtcgaacgccgagttcctg
atgcagatccagaagacgacgccgacgcccggcaacggcgactga
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