Streptomyces coelicolor: SCO5745
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Entry
SCO5745 CDS
T00085
Symbol
SC9A10.09
Name
(GenBank) conserved hypothetical protein SC9A10.09
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sco
Streptomyces coelicolor
Pathway
sco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCO5745 (SC9A10.09)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sco03019
]
SCO5745 (SC9A10.09)
Messenger RNA biogenesis [BR:
sco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SCO5745 (SC9A10.09)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CAA20296
Kitasato:
SCO5745
UniProt:
O86842
Structure
PDB
PDBj
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All DBs
Position
6267805..6269490
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AA seq
561 aa
AA seq
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MSHPHPELGRPPALPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVAEGHRERVGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDGRLTDLHAFARLSEEGIDLLLADSTNAEVPGFVPPERDISNVLRQVFANARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
SEVVLVCTGSQGEPMAALSRMANRDHQIRIVNGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVEGKAKITGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VMDSSTGKITGGPHVQARGSGIEDSAFAAVLPKVTEALERSAQDGVVEPHQMQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactgggccggcccccggcgcttcccaagggcggcctgcgg
gtcacgcccctcggtggcctcggcgaaatcggccgcaacatgacggtcttcgaatacggc
ggccgtctgctgatcgtcgactgcggcgtgctcttccccgaggaggagcagcccggcatc
gacctgatcctgccggacttcacgtccatccgggaccgcctcgacgacatcgagggcatc
gtcctgacccacggccacgaggaccacatcggcggcgtccccttcctcctgagggagaag
ccggacatcccgctgatcggctccaagctgaccctcgcgctcatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctcgaggtggcggagggacaccgtgaacgcgtcggt
cccttcgactgcgagttcgtcgcggtcaaccactccatcccggacgcgctggccgtcgcc
atccgcaccccggcgggcatggtggtccacaccggcgacttcaagatggaccagcttccg
ctggacggccgcctcaccgacctgcacgctttcgcgcgcctcagcgaggagggcatcgac
ctgctcctcgccgactcgaccaacgccgaggtgccgggcttcgtcccgcccgagcgggac
atctcgaacgtcctgcggcaggtcttcgccaacgcccgcaagcgcatcatcgtggcgagc
ttcgccagtcacgtccaccgcatccagcagatcctggacgccgcccacgagtacggccgc
agagtcgccttcgtcggccgctccatggtccgcaacatgggcatcgcgagagacctcggc
tacctcaaggtcccgccgggcctggtggtcgacgtcaagacgctggacgacctgcccgac
agcgaggtggtcctggtctgcacgggctcccagggcgaaccgatggccgccctgtcccgc
atggccaaccgggaccaccagatccgcatcgtcaacggcgacacggtgatcctggcctcg
tccctcatcccgggcaacgagaacgcggtgtaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccacgtctcgggccacgcttcggcc
ggtgagctgctgtacttctacaacatctgccgcccgaagaacctgatgccggtccacggc
gaatggcgccacctgcgtgccaacgccgagctgggcgccctgaccggcgtcccgcacgac
cgcatcgtcatcgccgaggacggcgtggtcgtcgacctcgtcgagggcaaggcgaagatc
accggcaaggtccaggcggggtacgtctacgtcgacgggctctcggtcggcgacgtcggc
gaaccggccctcaaggaccgcaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtgatggactcctccaccggcaagatcaccggtgggccgcacgtccaggcccgcggctcg
ggcatcgaggactcggccttcgccgcggtactccccaaggtcaccgaagcgctggagcgc
tcggcccaggacggtgtcgtcgagccgcaccagatgcagcaactgattcgcaggaccctc
ggcaagtgggtctcggacacctaccggcgccggccgatgatcctgcctgtcgtcgtggag
gtctga
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