Streptomyces coelicolor: SCO7345
Help
Entry
SCO7345 CDS
T00085
Symbol
SC4G10.24c
Name
(GenBank) probable ATP-dependent DNA ligase.
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sco
Streptomyces coelicolor
Pathway
sco03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCO7345 (SC4G10.24c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sco03400
]
SCO7345 (SC4G10.24c)
Enzymes [BR:
sco01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCO7345 (SC4G10.24c)
DNA repair and recombination proteins [BR:
sco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCO7345 (SC4G10.24c)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CAB92891
Kitasato:
SCO7345
UniProt:
Q9KXZ8
LinkDB
All DBs
Position
complement(8158531..8159511)
Genome browser
AA seq
326 aa
AA seq
DB search
MELPPIPPMLATPGTLPPAGQDTRWAYETKQDGQRVVVYLPGDGSVLLRARSGQDITAAY
PELAPLATALGGTPAVLDGEVLALDEQGRADFQLLQSRMGLAHTPARAAHRAAKVPVHLV
LFDALHLAGRSLLRLPYTGRRERLTDLGLNGPSWSTPAALVGHGAQALRATREHGLEGLV
CKRLDSVYEPGVRSRAWIKIRNMRSEDVVVGGWLPGKGRLGGLPGAVLVGQRAAGRLRYV
GGVGTGWSAGERTELAALLAAAASDVCPFDPVPRVPGARWVVPRLVGEVRYSTRTREGML
RQPSWLRLRPDLAPEESAADLPDDLA
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtggagctgccgccgatccctccgatgctcgccacccccggcaccctgccgcccgccggg
caggacacgcgctgggcctacgagaccaagcaggacggacagcgcgtggtggtctacctg
cccggcgacggaagcgtcctgctgcgtgcccgctccggccaggacatcaccgccgcctat
ccggaactggctccgctcgccaccgcgctcggcgggacccccgccgtactggacggggag
gtgctggccctggacgaacagggccgtgccgacttccagttgctccagtcccggatgggc
ctcgcgcacacaccggcccgggcggcgcaccgggcggcgaaggtccccgtccacctggtg
ctcttcgacgccctgcacctggcgggccgctccctgctgcgcctgccctacaccggccgc
cgtgagcggctgacggacctcgggctgaacgggccgtcgtggtcgaccccggccgcgctg
gtcgggcacggcgcacaggccctgcgggccacccgcgagcacggcctggaggggctggtg
tgcaagcggctggactcggtgtacgagcccggggtccgctcccgggcctggatcaagatc
cgcaacatgcgcagcgaggacgtcgtggtgggcggctggctgcccggcaaggggcggctc
ggcggtctcccgggcgccgtcctggtcggccagcgcgccgctggccggctgcgctacgtc
ggcggggtcggcaccggctggagcgcgggcgagcgcaccgagctggccgcgctgctggcg
gccgctgccagtgacgtctgccccttcgacccggtgccgcgggtgccgggggcgcgctgg
gtcgtgccccggctggtcggcgaggtccgctacagcacccgcacccgggagggcatgctg
cgccagccgtcctggctcaggctccgtccggacctggcacccgaggagtcggccgcggac
ctgccggacgacctggcgtga
DBGET
integrated database retrieval system
