Streptomyces coralus: QU709_10655
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Entry
QU709_10655 CDS
T09650
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
scoa
Streptomyces coralus
Pathway
scoa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scoa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QU709_10655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scoa03019
]
QU709_10655
Messenger RNA biogenesis [BR:
scoa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QU709_10655
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WLW51804
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Position
complement(2433061..2434746)
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AA seq
561 aa
AA seq
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MSHPHPELGSPPPLPQGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVSEGNRERVGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFGNARKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
HEVVLVCTGSQGEPMAALSRMANRDHQIRIVNGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGALTGVPHD
RIVIAEDGVVVDLVEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRKILGDEGIISVFV
VMDASTGKITGGPHIQARGSGIEDSAFADVIPRVTEVLERSAQDGVVEPHQLQQLVRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggctcgcccccgccgctgccccagggcggcctccgg
gtcaccccgctcggcggtctcggcgaaatcggccgaaacatgacggtcttcgagtacgga
ggccggctgctgatcgtcgactgcggcgtgcttttccccgaggaggagcagcccggcatc
gatctgatcctgccggacttctcgtccatcagggaccgtctcgacgacatcgagggcatc
gtcctcacccacggccacgaggaccacatcggcggtgtccccttcctccttcgcgagaag
ccggacatcccgctgatcggctccaagctgaccctcgccctgatcgaggccaagctccag
gagcaccggatccgcccgtacacccttgaggtgtcggaggggaaccgcgagcgcgtcggc
cccttcgactgcgagttcgtcgccgtcaaccactccatcccggacgccctggccgtggcc
atccgcacccccgccggcatggtggtgcacacgggcgacttcaagatggaccagttgccg
ctggacaaccgcctcacggatctgcacgcgttcgcacgtctgagcgaggagggcatcgac
ctcctcctctccgactcgacgaacgccgaggtcccggggttcgttccgcccgagcgggac
atctccaacgtcctgcgtcaggtcttcgggaacgcccgcaagcggatcatcgtggcgagc
ttcgccagtcacgtccaccgcatccagcagatcctggacgcggcccacgagtacggccgc
cgggtcgccttcgtcggccgctcgatggtccgcaacatgggcatcgcgcgcgacctgggc
tatctgaaggtcccgccgggtctggtggtcgacgtcaagacgctcgacgacctgcccgac
cacgaggtcgtcctggtctgcaccggctcccaaggcgaacccatggccgccctctcccgg
atggccaaccgggaccaccagatccggatcgtcaacggcgacacggtgatcctggcgtcc
tccctgatccccggcaacgagaacgcggtctaccgcgtgatcaacggcctgacccgctgg
ggcgccaacgtcgtccacaagggcaacgccaaggtccatgtctccggccacgcgtccgcg
ggcgagctgctgtacttctacaacatctgccgcccgaagaacctgatgccggtccacggc
gaatggcgccatctgcgggccaacgccgagctgggcgccctgacgggtgtcccgcacgac
cggatcgtcatcgcggaggacggcgtcgtcgtcgacctcgtcgagggcaaggccaagatc
tcgggcaaggtccaggcgggctacgtgtacgtcgacggcctctcggtcggcgatgtcggt
gagccggcgctgaaggaccggaagatcctcggcgacgagggcatcatctcggtcttcgtg
gtcatggacgcctccaccggcaagatcacaggtggtccgcacatccaggcccgcggttcg
ggcatcgaggactccgccttcgccgacgtcattccgagggtcaccgaggtcctggagcgt
tcggcgcaggacggcgtggtcgaaccccaccagctccagcagctggtgcggcggaccctc
ggcaagtgggtctcggacacctaccggcgcaggccgatgatcctgcctgtcgtggtggag
gtctga
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