Streptomyces coralus: QU709_17700
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Entry
QU709_17700 CDS
T09650
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scoa
Streptomyces coralus
Brite
KEGG Orthology (KO) [BR:
scoa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scoa03016
]
QU709_17700
Enzymes [BR:
scoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QU709_17700
Transfer RNA biogenesis [BR:
scoa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QU709_17700
Prokaryotic type
tRNA splicing ligases
QU709_17700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WLW58480
LinkDB
All DBs
Position
complement(4005238..4006431)
Genome browser
AA seq
397 aa
AA seq
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MSYVEMPGAKVPIRMWTDPASVEEGALQQLRNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRGMHDSPVDPG
RLHGFGTAGWEDFWGRFDGVADAVKFRQERAGKQMGTLGSGNHMIEVCLDQSNSVWLMLH
SGSRNIGKELAEYHIGVAQKLPHNQGLVDRDLAVFVSDTPQMAAYRNDLYWAQEYAKYNR
AIMMGLLKDVIRKEFKKAKPTFETEISCHHNYVAEERYEGMDLLVTRKGAIRAGSGEYGI
IPGSMGTSSYIVKGLGNEKAFNSASHGAGRRMSRSAAKRRFSVRDLEEQTRGVECRKDSG
VLDEIPGAYKNIDQVMEQQRDLVEVVAKLKQFICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtggaaatgccgggcgcgaaggttccgatccggatgtggaccgacccggcc
tccgtcgaggagggtgcgctccagcaactgcgaaacgtggcgaccctgccgtggatcaag
ggcctcgcggtcatgccggacgtccattacggcaagggggcgacggtcgggtccgtcatc
gcgatgcggggtgcggtgtgtccggcggcggtcggcgtcgacatcgggtgtgggatgtcg
gcggtgaagacatcccttacggcgaacgatctgccgggggacctgtcccggctgcggtcg
aagatcgagcaggcgattccggtggggcgggggatgcatgacagtcccgtggatccgggg
cggctgcacgggttcggtactgcggggtgggaggacttctgggggcggttcgacggggtt
gcggacgcggtcaagttccgtcaggaacgtgcaggaaagcagatgggaacgctcggatcc
ggcaatcacatgatcgaagtctgtctagatcagtcaaattcggtctggctcatgctgcac
tccggctcccggaacatcggcaaggaactggccgagtaccacatcggtgtcgctcagaag
cttccgcacaaccaggggctggtcgaccgcgacctcgcggtgttcgtctcggacactccg
cagatggcggcgtaccggaatgatctttactgggcgcaggaatacgccaagtacaaccgc
gcgatcatgatggggctcctgaaggacgtgatccgcaaggagttcaagaaggcgaagccg
accttcgagacggagatctcctgccaccacaactacgtggcggaggagaggtacgagggc
atggacctgctggtcactcgtaagggagcgatccgcgcgggctccggcgagtacgggatc
attcccggctcgatgggcaccagctcgtacatcgtgaaggggctcggaaacgagaaggcc
ttcaactcggcctcccacggggcgggtcggcgtatgagccggagcgcggccaagaggcgt
ttctcggtacgggatctggaggagcagacgcggggtgtcgagtgccgcaaggactccggc
gtcctggatgagattccgggtgcctacaagaacatcgaccaggtgatggagcagcagcgc
gatctcgtcgaggtcgtggcgaagctgaagcagttcatctgtgtgaagggttga
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