Streptomyces coeruleorubidus: CP976_11535
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Entry
CP976_11535 CDS
T07302
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
scoe
Streptomyces coeruleorubidus
Brite
KEGG Orthology (KO) [BR:
scoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scoe03019
]
CP976_11535 (hrpB)
Enzymes [BR:
scoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP976_11535 (hrpB)
Messenger RNA biogenesis [BR:
scoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP976_11535 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
AAA_22
CON_HrpB
AAA_25
Helicase_RecD
nSTAND3
NTPase_1
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QEV24728
UniProt:
A0A5J6HY62
LinkDB
All DBs
Position
2463967..2466507
Genome browser
AA seq
846 aa
AA seq
DB search
MIRYDALDALPVRGALPALDDALAGHGTAVLVAPPGTGKTTLVPLALAGLLGEGPRRRVI
VAEPRRIAARAAARRMAWLLGEKVGESVGYTVRGERVVGRHTRVEVVTTGVLVQRVQRDQ
ELAGTDVVVLDECHERHLDADTAAAFLWDVRQTLRPELRLVAASATTDAQGWAALLGGAP
VVEAQGAAYPVEVVWAPPVRPVRPPHGMRVDPALLTHVASVVRRALAERDGDVLCFLPGV
GEIARVAGQLGGLGDVEVLQVHGRAPAAVQDAVLAGGEGRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGLSALTTVRASQAAGRQRAGRAGREAPGAVYRCWAEAEDARLPR
FPSPEIKVADLTAFALQVACWGDPDASGLALLDAPPGGAMAAAREVLAAVGAVDSVGRAT
ERGAALARLGLHPRLGRALLDGSGWVGAERATEVIALLSEEAPREYGDDLAGALRRARRG
GDAYSGRWRAEVRRLRAVVSGVSHPPARISRPEARVDAWATSSEERQVGLVAALAFPERV
AKADGGSYLMASGTRAEAGDGSALRGCPWIAVAMADRPVGKGHARVQLGSVVDEETARLA
AGALLEERDEVRWDGGDVVARRVERLGAVELAVRPLKNADPELVRGALLEGLRREGVGVL
RWSPDAGVLRQRLAFLRLHLGEPWPDVSDDALHARVDEWLEPELSRARRRADLARIDAGA
ALARLLPWASGEAGRLDELAPERITVPSGSRIRVDYARPEQPVLAVKLQEMFGLQESPRV
AGVPLLVHLLSPAGRPAAVTADLASFWKDGYKGVRAELRGRYPKHPWPEDPAGAEPTRHT
SARLRR
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgccctgcccgtacgcggtgccctgcccgccctggac
gacgccctggcggggcacggcaccgccgtcctcgtggcgccgcccggcaccggcaagacg
acgctggtgcccctggccctggcggggctgctcggggaagggccccggcggcgggtgatc
gtcgccgagccgcggcggatcgcggcccgggcggcggcgcggcggatggcgtggctgctg
ggcgagaaggtcggcgagagcgtcggctacaccgtgcgcggggaacgcgtcgtcgggcgg
cacacgcgcgtggaggtcgtcacgaccggtgtgctggtgcagcgggtgcagcgggaccag
gagctggccggtacggacgtggtggtgctcgacgagtgccacgagcggcatctggacgcg
gacacggcggcggcgttcctgtgggacgtacggcagacgctgcgccccgagctgcggctg
gtggccgcctcggcgacgaccgacgcgcaggggtgggccgcgctgctgggcggcgctccg
gtggtcgaggcgcagggggcggcgtatccggtggaggtcgtgtgggcaccgccggtgcgg
ccggtacggccgccgcacgggatgcgtgtcgatccggcgctgctgacgcatgtggcgtcg
gtggtgcggcgggcactggccgagcgggacggggacgtgctgtgtttcctgccgggggtg
ggcgagatcgcccgggtcgccgggcagctcggcgggctcggggacgtcgaggtgcttcag
gtgcacgggcgggcgcccgcggccgtgcaggacgccgtgctggccggcggggagggtcgc
cgggtggtgctggccacgtcggtggccgagtcgtcgctgacggttcccggtgtgcgcgtg
gtcgtcgactccgggctggcgcgggagcctcgcgtggaccacgcgcgcgggctgagcgcg
ctgacgacggtgcgggcgtcgcaggcggccgggcggcagcgggcggggcgggccgggcgt
gaggcgccgggggcggtgtaccggtgctgggcggaggccgaggacgcgcgtctgccgcgc
tttccctcgccggagatcaaggtggccgacctgacggcgttcgcgcttcaggtggcgtgc
tggggggacccggacgcctccgggctggcgttgctggacgcgccgccgggtggggcgatg
gcggcggcgcgggaggttctggcggccgtgggtgcggtcgactccgtcggccgggccacg
gagcggggtgctgcgctggctcggctggggttgcatccgcggttggggcgggcgttgctc
gacgggtccggctgggtcggggcggagagggccaccgaggtcatcgcgttgctcagtgag
gaggctccgcgggagtacggggatgatctggcgggtgcgttgcgtcgtgcccggcgtggg
ggtgacgcctactccgggcggtggcgggcggaagttcggcggctgcgggccgtcgtttca
ggcgtttcccacccacccgcccgtatctcgcgtccagaagcacgggtcgacgcgtgggcc
acctcctcggaggaacgccaggtcggtctcgtcgccgctctcgcctttcccgagcgtgtc
gccaaggccgacggtgggtcgtatctcatggcgtccggaacccgtgccgaggccggggac
ggaagcgcgctgcgcggttgcccctggatcgctgtcgccatggccgaccggcccgtcggc
aagggccacgcgcgcgtgcagctcgggtctgtcgtcgacgaagagacggcccggctcgcg
gccggcgcgttgctggaggagcgggacgaggtgcgctgggacggcggggacgtcgtagcg
cggcgggtggagcggctgggggccgtggagctggctgtgcggccgctgaagaacgccgat
ccagagctcgtacgcggtgcgctgctggaggggctgcggcgggaaggggtcggcgtgctg
cggtggtcgccggatgccggtgttctgcggcagcggctcgcgttcctgcggctgcacctc
ggtgaaccatggcccgacgtctccgacgacgcgctgcacgcgcgcgtggacgagtggctg
gagccggagctgagccgggcccggcggcgggccgatctggcgcggatcgacgccggggcg
gcgctcgcgcggctgctgccctgggcctccggggaggccgggcggctcgacgagctcgcc
ccggagcggatcaccgtgccgagcgggtcgaggatccgcgtcgactacgcccggcccgag
cagcctgtgctggcggtgaagttgcaggagatgttcgggctccaggagtcgccgcgggtc
gcgggggtgccgctgctcgtccatctgctgtcgccggccgggcggccggccgccgtcacg
gccgatctcgcctccttctggaaggacggttacaagggagtgcgggcggagctgcgcggg
cggtatccgaagcatccgtggccggaggacccggccggggccgagccgacccggcacacc
agcgcccggctcaggcgctga
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