Streptomyces coeruleorubidus: CP976_15135
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Entry
CP976_15135 CDS
T07302
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scoe
Streptomyces coeruleorubidus
Pathway
scoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CP976_15135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scoe03019
]
CP976_15135
03009 Ribosome biogenesis [BR:
scoe03009
]
CP976_15135
Enzymes [BR:
scoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CP976_15135
Messenger RNA biogenesis [BR:
scoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CP976_15135
Ribosome biogenesis [BR:
scoe03009
]
Prokaryotic type
rRNA processing factors
CP976_15135
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QEV25357
UniProt:
A0A5J6I919
LinkDB
All DBs
Position
complement(3277613..3281758)
Genome browser
AA seq
1381 aa
AA seq
DB search
MLGPTEPTESATDSEQNTPSDTLPPRRRRRAASRPAGPPVGTSSDAPVETVTPAIPAAEP
EDLAADAVEDGEAEETAAEETAAAAQETSEAAESAEEAAPAAPKRRRVVRRAAAPAGAPA
SAEAAETVVPVTAAAPADSEASEQAEASAPAEVSEDAAPRRTRRRATRTVTSPAATPAET
ETAPAAVAQAEPGAPEAAAAVDGADTAEAAEEAAPRRTRRRATRRVTAPTAAPAAADAAE
ETADAGRSGSVATTDAPAEAVAAASGGPAEAPSGSPAEEAKAPVTDSPAAESEGASEAAA
QASEPAEDAAPRRRRRAVRRAASGFAEPAQSSRGSRSSKSAQAAAGDDEASARPARPAVA
VFQAPVFTEPQFQTPERAAAAAAAEAAGPEEPEEAEESASAEVREEQSGGSRRRRRRRGS
ADEPEAQAAEAPAAESAAVDEVEEPEESAEGEDQDDSEGAGSRRRRRRGGRRRRRGESAE
SDAEGGEGTDAESEQEAEDSAEQAEEDQDESDEAADRDESGGGSSSSRRRRRRRRRAGDT
AADAAEPSEDDPERTVVKVREPRPKAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVP
IITEAEFLARREAVDRVMVVRQHGDRTQIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQ
NVLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQSVLVQVTKDPIG
HKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAA
EGASEDELRRDVERLQGQWEEIQKKSKNGGNAPTLLYGEPDMTVRVVRDIFNEDFSKVVV
SGDEAWSTIHGYVSHVAPDLAERLTKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSLV
IDRTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMV
LESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGRG
VIVHMEQPTSAGGGGKRKKRARAGAAEPHVHEAAVETAEEEAETEAEVGAEIAEPVALPE
PVFEPDEELYSSAAEAEAAAGRGRTRRRASRRASSPAGAPRGETAEPKTRQDRQAEQAEA
EVPTAQDVTAAEEVARPVQPEPAAEAHAEPMAVEDPVVEAPAAEEAAPKGRGRRRATRKV
SAPAGSPAGAEATVVTVSETAPAASEATQVPEQAEQPAATAEAAVEAPAESAAPARPRRR
AVRKPTVSTASEEAAVVVVPSAASEEAPEAAEAAVAEGAATEEAAEESAPAKKTARKTAK
KATAKKAATKKTAVKKTAAKKTTAKKAAAKTTKTAAKKTTSKKTVAAEQSRSSVSASTDE
D
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgctcggaccgaccgaacccacagagtccgccacggactccgaacagaacactcccagc
gacaccctgccgcctcgccggcggcgtcgtgccgcgtcccggccggcgggtccgcccgtc
ggcacctcctccgacgctccggtggagaccgtcacgccggccataccggccgcggagccc
gaggacctcgcggctgacgccgtagaggacggcgaggccgaggagaccgccgccgaggag
acggccgcagcggcgcaggagacttccgaggctgcggagagcgccgaggaggccgcgccc
gccgctccgaagcggcgccgtgtggtccgccgtgccgccgcgcccgccggggctcccgcg
tccgccgaggccgccgagaccgtggtgccggtgaccgccgccgctccggccgattccgag
gcgtcggagcaggccgaggcctccgcacccgccgaggtgtccgaggacgccgctccccgg
cgcacccggcgtcgtgcgacgcgcacggtgacctcccctgccgcgaccccggcggagacg
gagacggcgccggccgccgtcgcacaggccgagccgggcgcccctgaggccgccgcggcc
gttgacggcgccgacaccgcggaggccgccgaggaggctgctccgcgccggactcggcgg
cgtgccacacgacgcgtgaccgcgcccaccgcagcgcctgccgccgcggacgcggccgaa
gaaaccgccgacgcgggccggtccggctccgtcgccaccaccgacgcgcccgccgaggcc
gtcgccgccgcgtctggtgggcccgccgaggccccctccggctcgcccgccgaggaggcg
aaggcacctgtgaccgattcccctgccgctgagtccgagggagcatccgaggccgccgcc
caggcttccgagcccgccgaggacgccgctccgcggcgccgccgccgggccgtccgccgg
gccgccagtggtttcgccgagcccgcgcagtcctcgcggggttcccggtcctcgaagtcc
gcgcaggccgccgccggtgacgacgaggcgtcggcgcggcccgcgcggcccgctgtcgcc
gtgttccaggcgcccgtgttcaccgagccccagttccagacgccggagcgggccgcagcc
gcagccgccgccgaggcggccgggcccgaggagcccgaggaggcggaggagtccgcgtcg
gccgaggtgcgcgaggagcagtccggcgggtcgcgccgccggcgtcgtcgccggggttcc
gcggacgagcccgaggcccaggccgccgaggcccccgctgccgagagtgccgccgtcgac
gaggtggaggagcccgaggagtccgccgagggcgaggaccaggacgactccgagggtgcc
ggctcgcgccgtcgccgtcgccggggcggccgccgccgtcggcgcggtgagtccgccgag
agcgacgccgagggcggcgagggcacggacgccgagtccgagcaggaggccgaggacagc
gcggagcaggccgaggaggaccaggacgagtctgacgaggccgccgaccgtgacgagtcg
ggcggcggctccagcagcagccgccggcgccggcgccgccgtcgccgtgccggtgacacc
gcggccgacgccgccgagccctccgaggacgacccggagcgcacggtcgtcaaggtccgc
gagccccgccccaaggccgaaccgtccgacgaggtgcagtccatcaagggctcgacccgt
ctggaggccaagaagcagcgccgccgggagggccgcgagcagggccgccgaagggtgccg
atcatcaccgaggccgagttcctggcccggcgcgaggccgtcgaccgcgtgatggtcgtc
cggcagcacggcgaccgtacgcagatcggcgtcctggaggacggcgtgctcgtcgagcac
tacgtcaacaaggaacagtcgacctcgtacgtcggcaacgtctacctcggcaaggtgcag
aacgtgctgccgtcgatggaggccgccttcatcgacatcggcaagggccgcaacgccgtc
ctgtacgccggtgaggtcaacttcgaggcgctcggcatggccaacggcccgcggcgcatc
gagtccgccctgaagtccgggcagtccgtgctcgtccaggtgaccaaggaccccatcggg
cacaagggtgcccgtctgaccagccaggtctccctccccgggcgctacctcgtgtacgtg
cccgagggctccatgaccggcatcagccgcaagctgcccgacacggagcgggcgcggctg
aagacgatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgcc
gagggcgcgagcgaggacgagctgcgccgggacgtcgagcggctccaggggcagtgggag
gagatccagaagaagtccaagaacggcggcaacgcgccgacgctgctgtacggcgagccg
gacatgaccgtccgggtcgtgcgcgacatcttcaacgaggacttctccaaggtcgtcgtc
agcggcgacgaggcgtggtcgaccatccacgggtacgtctcgcacgtcgcgccggacctc
gccgagcggctgacgaagtggacctccgaggtcgacgtcttcgccacgtaccggatcgac
gagcagctcgccaaggcgctggaccgcaaggtgtggctgcccagcggcggctcgctggtg
atcgaccggaccgaggcgatggtcgtcgtcgacgtcaacaccggcaagttcaccggccag
ggcggcaacctcgaggagaccgtcaccaggaacaacctggaggcggccgaggagatcgtg
cgccagctccggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtg
ctggagtccaaccgggacctggtgctgcggcgcctgctcgaatgcctgggccgggaccgc
acgaagcaccaggtggccgaggtgacctcgctgggtctcgtgcagatgacccgcaagcgg
gtcgggcaggggctcctggagtccttctccgagacctgcgtccactgcaacggacgcggt
gtcatcgtgcacatggagcagccgacctccgccgggggcggcggcaagcgcaagaagcgt
gcgcgtgccggtgccgccgagccgcacgtgcacgaggcggccgtcgagaccgccgaggag
gaggcggagaccgaggccgaggtcggtgccgagatcgccgagccggtcgcgctgcccgag
ccggtcttcgagcccgacgaggagctgtacagcagcgccgccgaggcggaggccgcggcc
ggtcgcgggcggacgcgacgccgggcgagccggcgggcgtcgtctccggcgggtgcgccg
cgcggtgagacggccgagccgaagacccggcaggacaggcaggccgagcaggccgaggcc
gaggtgccgacggctcaggacgtgaccgccgccgaggaggtcgcccgtccggtgcagccg
gagccggccgccgaggcgcacgccgagccgatggccgtcgaggacccggtcgtcgaggcc
ccggccgccgaggaggccgcgcccaagggccgtggccgtcgtcgggcgacgcgcaaggtg
tccgcgccggccggttctccggcgggggcggaagcgaccgtggtgacggtttccgagacc
gcgcccgccgcgtccgaggccactcaggtgcccgagcaggccgaacagcccgcggcgacg
gccgaggcggccgtcgaggcgcccgccgagagcgccgccccggcccgtccgcggcgccgt
gccgtgcgcaagcccaccgtgtccacagcgtccgaggaggcggccgtcgtggtcgtcccg
tcggcggcgtccgaggaggcccccgaggccgccgaggccgccgtggctgaaggcgccgcc
acggaggaggccgccgaggagtcggccccggccaagaagacggcccgcaagacggccaag
aaggccacggcgaagaaggccgccaccaagaagaccgcggtgaagaagaccgcggccaag
aagacgacggcgaagaaggcggcggcgaagaccaccaagaccgccgcgaagaagaccacg
tcgaagaagaccgtcgcggcggagcagtcccgctcctccgtctcggcctccaccgacgag
gactga
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