Streptomyces coeruleorubidus: CP976_24880
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Entry
CP976_24880 CDS
T07302
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
scoe
Streptomyces coeruleorubidus
Brite
KEGG Orthology (KO) [BR:
scoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scoe03016
]
CP976_24880
Enzymes [BR:
scoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CP976_24880
Transfer RNA biogenesis [BR:
scoe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CP976_24880
Prokaryotic type
tRNA splicing ligases
CP976_24880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QEV27037
UniProt:
A0A5J6IDV3
LinkDB
All DBs
Position
5378130..5379323
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AA seq
397 aa
AA seq
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MSYVEIPGAKVPIRMWTDPSTVEGSALQQLQNVATLPWIKGLAVMPDVHYGKGATVGSVI
AMQGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSRVEQVIPVGRGMHDDPVDPG
RFHGLATAGWDDFWGRFDGVAEAVKFRQERATKQMGTLGGGNHFVEVCTDTTGSVWLMLH
SGSRNIGKELAEHHIGVAQKLPHNQGLVDRDLAVFVADTPQMAAYRNDLFWAQEYAKYNR
SIMMALLKDVIRKEFKKAKPAFEPEISAHHNYVAEERYDGMDLLVTRKGAIRAGSGDYGI
IPGSMGTGSYIVKGLGNDKSFNSASHGAGRRMSRNAAKRRFSTKDLEEQTRGVECRKDSG
VVDEIPGAYKPIEQVIDQQRDLVEVVAKLKQVVCVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtagagatacctggtgcgaaagtaccgatccggatgtggaccgacccgtcc
acggtcgagggctccgcgctccagcagctccagaacgtcgccacgctgccctggatcaag
ggcctggccgtcatgcccgacgtgcactacggcaagggtgcgacggtcggttcggtcatc
gccatgcagggtgcggtgtgcccggcggcggtgggcgtcgacatcggctgcggaatgtcg
gccgtgaagacgtccctgacggcgaacgacctgcccggggatctgtcgcggctgcggtcg
cgggtcgagcaggtgattccggtggggcgggggatgcatgacgatcccgtcgaccccggg
cggttccatgggttggccactgccgggtgggacgacttctgggggcggttcgacggggtt
gcggaggcggtcaaattccgtcaggaacgggccacgaagcagatgggaacgctcggcggg
ggcaaccactttgtcgaagtctgcacggatacgaccggctctgtctggctgatgctccac
tccggttcccgcaacatcggcaaggagctggccgagcaccacatcggcgtggcccagaag
ctcccgcacaaccagggcctggtcgaccgcgacctcgccgtcttcgtcgcggacaccccg
cagatggcggcgtaccgcaacgacctgttctgggcgcaggagtacgcgaagtacaaccgc
tcgatcatgatggcgctcctgaaggacgtgatccgcaaggagttcaagaaggccaagccg
gccttcgagccggagatcagcgcgcaccacaactacgtggccgaggagcgctacgacggg
atggacctgctcgtgacccgtaagggcgcgatccgggcgggctccggcgactacgggatc
atcccgggctccatgggcacgggttcgtacatcgtgaagggcctcggcaacgacaagtcc
ttcaactcggcctcgcacggcgcgggccggcgcatgagccgcaacgcggccaagcgccgg
ttctcgacgaaggacctggaggagcagacgcggggcgtggagtgccgcaaggactccggc
gtcgtggacgagatcccgggcgcctacaagccgatcgagcaggtcatcgaccagcagcgg
gacctggtggaggtcgtggcgaagctgaagcaggtcgtgtgcgtgaagggctga
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