Siccibacter colletis: KFZ77_02015
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Entry
KFZ77_02015 CDS
T08544
Symbol
csrD
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
scol
Siccibacter colletis
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scol03019
]
KFZ77_02015 (csrD)
Messenger RNA biogenesis [BR:
scol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KFZ77_02015 (csrD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
MscS_TM
Motif
Other DBs
NCBI-ProteinID:
UYU32319
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Position
401948..403888
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AA seq
646 aa
AA seq
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MRLTTKLSALVTLLTVLAILVTLIGCTVGFYYTVQARAEQRVQTVAILLDNHLVTHPPER
LTERLDELMIPADINSITFQQGDSTLFHYHRSPGLNDEEREDDALATDVPLLKVPGMTLK
FSWQDPMASYFQSLKTSAPLSIAMLVIIAMLVAALRWQRRQFIGHEQLERRAMCIIRGER
GARVQRSPDEPPTQASYAIDMLLAEIENAGEQRSRMDTLIRAHAAQDTRTGLNNRLFFDN
QLGTLLEDPEKVGTHGVVMIIRLPDFDTLADTWGRVAVEEYLFTLINMLSTFIMRYPGAL
LARYFRSDFAVLLPHRTLKEADGIASQLLNAVDSLPPTRMLDRSDMIHIGICAWRSGQTT
EQVMEHAGMATRNAVLQGGNSWAVYDNMLPEKGRGNVRWRTLIEQALQRGGPRFYQKPAI
NVDGSVHHREIMCRIFDGKEEVSSAEYKPLVQQFGLAEQYDTQQVSRVLPLLALWPEETL
AMPVSVDSLIRPTFQRWLRDALLECEKSQRQRIIFELAEAAVCQHISEVQPIVRLIKALG
VRVAVIQAGLTVVSTNWIKVLNVELIKLDPGLVRNIEKRTENQLFIQSLVESCSGTQTQL
FATGIRTRSEWQTLVEMGVAGGQGEYIAASQPLDTGVKKYLQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttaacgacgaaactctcggccctcgttaccctgctaacggtgctggcgatcctc
gtcactctcattgggtgtacggtcggcttttattacaccgtgcaggcgcgcgcagagcag
cgcgtccagaccgtcgccattctgcttgataaccacctggttacgcatccaccggagcgg
ctgaccgaacgccttgatgaactgatgatcccggccgacatcaacagcatcacttttcag
cagggcgacagcacactgtttcactaccatcgttctcccggcctcaacgacgaggagcgt
gaagatgacgcccttgccacggacgtcccgctgctgaaagtaccgggaatgacgctgaag
ttcagctggcaggacccgatggcgagctattttcagtcactgaaaacctccgcaccgctg
agcattgccatgctggtcatcatcgccatgctggtggctgcgctacgctggcagcgccgg
cagtttatcggccatgagcagctggagcgccgggcaatgtgcattattcgcggcgagcgt
ggtgcgcgggtgcagcgttccccggacgaaccgccaactcaggccagctacgccattgat
atgctgctggcggaaatcgaaaacgccggtgagcagcgcagccgcatggatacgctgatc
cgcgcccatgccgcacaggacacccgcaccgggctgaataaccgcctgttctttgataac
cagctgggcacgctgctggaagatccggaaaaggtgggaacccacggcgtggtgatgatc
attcgcctgcccgacttcgataccctcgccgacacctggggacgcgtggcggttgaagag
tacctgttcacgctgatcaacatgctctctacctttattatgcgttaccccggtgcgctg
ctggcgcgctacttccgcagcgattttgccgtactgctgccgcaccggacgctgaaagag
gcggacggcatcgccagccagctgcttaacgccgtggactctctgccgccgacgcgcatg
ctggatcgcagcgacatgatccacatcggtatttgcgcctggcgcagcgggcaaaccacc
gagcaggtgatggagcacgccggtatggcgacccgcaacgcggtgctgcagggcggcaac
agctgggcggtgtatgacaacatgctgccggaaaaagggcgcggcaacgtgcgctggcgc
accctgatcgaacaggcgctgcagcgcggcggcccgcgtttctaccagaagcccgccatt
aatgtagacggtagcgtgcaccatcgggaaatcatgtgccgtatattcgatggcaaagaa
gaggtgagctcggcggaatataaaccgctggtgcaacagtttgggctggcggagcagtac
gatacgcagcaggtcagccgtgtgctgccgctgctggcgctctggcctgaagagacgctg
gcgatgccggtctcggttgactcgttgattcgccccacgttccagcgctggctgcgcgat
gcgttgctcgaatgtgaaaaatcgcagcgtcagcgcattatttttgaacttgcagaggct
gccgtgtgtcaacacatcagcgaagttcagccgattgtccgtttgatcaaggcgttgggc
gtgcgcgtggccgtcattcaggccggtttaaccgtggttagcactaactggattaaggtg
cttaacgttgaactgattaagctcgacccgggtctggtacgcaacatcgaaaagcgcacc
gagaaccagctgtttattcaaagcctggtggagtcctgcagcggcacgcaaactcaactc
tttgccaccggaattcgcacgcgaagcgagtggcaaaccctggtagaaatgggcgtggca
ggcgggcagggcgaatatatcgcggcgtcgcaacccctcgacaccggggtgaaaaaatat
ttgcaaagatattcggtttga
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