Siccibacter colletis: KFZ77_02400
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Entry
KFZ77_02400 CDS
T08544
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
scol
Siccibacter colletis
Pathway
scol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ77_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scol03019
]
KFZ77_02400
03009 Ribosome biogenesis [BR:
scol03009
]
KFZ77_02400
Enzymes [BR:
scol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ77_02400
Messenger RNA biogenesis [BR:
scol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ77_02400
Ribosome biogenesis [BR:
scol03009
]
Prokaryotic type
rRNA helicases
KFZ77_02400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
UYU32391
LinkDB
All DBs
Position
482331..484241
Genome browser
AA seq
636 aa
AA seq
DB search
MAEFETTFTDLGLKAPILEALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNIDSDLRAPQILVLAPTRELAVQVAEAMTDFSKHMHGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSSLKGLVLDEADEMLRMGFIEDVETIMAQIPAE
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLSERRLAKFAAKVQQQLESSDLDQYRALLAKIQPAAEEELDI
ETLAAALLKMAQGERPLILPPDAPMRPKREFRERDDRFERRGDRNDRGPRGDRPERGGED
RPRRERRDVGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGSHSTIELP
KGMPGEVLQHFTRTRILNKPMNMQLLGDAQPRTGGGERRGGNGGGRGFGGERREGARPEG
RRFSGERREGGRSFGGERRESRGPRPEGAPTRRRDA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttactgatctgggcctgaaggctcctatccttgaagcc
cttaacgatctgggttacgaaaaaccatctccaatccaggctgaatgtattccgcatctg
cttggcggtcgcgatgttctgggtatggcccagactggtagcggcaaaaccgcagcgttc
tctctgccgctgcttaacaacattgattcagacctgcgcgcaccgcaaatcctggtgctg
gcgccgacccgcgaactggcggttcaggttgctgaagcaatgaccgatttctctaaacat
atgcatggcgtaaatgtcgtggccctgtacggcggccagcgttatgacgtgcagctgcgc
gccctgcgtcagggcccacagattgttgtgggtaccccgggccgtctgctggaccacctg
aagcgtggcacgctgaacctctccagcctgaaaggtctggtactggatgaagcggatgag
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggctgaa
catcagaccgcgctgttctccgcgaccatgccggaagcgatccgtcgcattacccgccgc
ttcatgaaagagccgcaggaagtgcgcattcagtccagcgtgaccactcgtccggacatc
agccagagctactggtctgtttacggcatgcgtaaaaatgaagcgctggtgcgtttcctg
gaagcggaagactttgacgcggcgatcatcttcgtgcgtaccaagaacgcgaccctggaa
gtggctgaagcgctggagcgcagcggttacaacagcgccgcgctgaacggtgacatgaac
caggcgctgcgtgagcagaccctggagcgtctgaaagacggtcgtctggatatcctgatt
gctactgacgttgctgcccgtggcctcgacgttgagcgtatcagcctggtggttaactac
gatatcccgatggactctgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccatcccggaagtagaactgccgaacgcagaactgctgagc
gagcgtcgtctggctaagttcgcggcaaaagtacagcagcagctggaaagcagcgatctg
gatcagtaccgtgccctgctggcgaaaatccagccggctgcggaagaagagctggatatc
gaaaccctggctgcagcactgctgaaaatggcccagggcgaacgtccgctgatcctgccg
ccggatgcgccgatgcgtcctaagcgtgagttccgtgagcgtgatgaccgcttcgaacgt
cgtggcgaccgtaatgaccgtggcccgcgtggcgatcgtccggagcgtggtggtgaagac
cgtccgcgtcgcgagcgtcgtgatgttggtgatatggaactgtaccgcattgaagtgggc
cgtgatgacggcgttgaagtacgtcacatcgttggcgcgatcgctaacgaaggcgacatc
agcagccgttacatcggtaacatcaagctgttcggttctcactccaccatcgagctgccg
aaaggtatgccgggcgaggtgctgcagcactttacccgtacccgcatcctgaacaagccg
atgaacatgcagctgctgggcgatgcgcaaccgcgcaccggtggtggcgagcgtcgcggt
ggtaacggcggtggccgtggtttcggcggtgagcgtcgcgaaggcgcgcgtccggaaggt
cgtcgcttcagcggtgaacgtcgtgaaggtggtcgcagcttcggcggcgagcgtcgtgaa
agccgtggtccgcgtcctgaaggcgcaccgacccgtcgtcgtgatgcataa
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