Siccibacter colletis: KFZ77_06030
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Entry
KFZ77_06030 CDS
T08544
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
scol
Siccibacter colletis
Pathway
scol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ77_06030 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scol03019
]
KFZ77_06030 (rhlE)
Enzymes [BR:
scol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KFZ77_06030 (rhlE)
Messenger RNA biogenesis [BR:
scol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KFZ77_06030 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
UYU33071
LinkDB
All DBs
Position
1245656..1247101
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AA seq
481 aa
AA seq
DB search
MSFDSLGLAPEILKAIAEQGYTQPTPIQQQAIPAVLAGRDVMASAQTGTGKTAGFTLPLL
QLLTQHNPHAKGRRPVRALILTPTRELAAQIGENVSAYSQYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNALKLDSVEILVLDEADRMLDMGFIHDIRRVLSKLPAR
RQNLLFSATFSDDIKGLAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GEGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKTGDIRVLV
ATDIAARGIDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
ERLLKREIPRIALPGYEPDPSIKAEPIVNGRQQQRGGGRGQGGGGRGQGQPRRQNSDSAA
KPTGDKPRRQGGDAAKPAGEKSRRQGGDSAKQGRWLGEGASRPSGDGARRRRPPRKASSG
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgattcacttggtcttgcccccgaaatcctgaaagcgatcgctgagcagggt
tacactcaaccgacccccatccaacagcaggctatcccggcagtgctggcaggccgtgat
gtgatggccagtgcccagaccggcaccggtaaaaccgcaggcttcaccctgccgctgctg
cagctgttgacccagcacaacccgcacgccaaagggcgtcgtccggtgcgcgccctgatc
ctcaccccgacccgcgaactggcggcgcagattggtgagaacgtcagcgcgtacagccag
tacctgaatatccgctcgctggtggtgttcggcggcgtgagcatcaacccgcagatgatg
aagctgcgcggcggtgtagacgtgctggtggcaacgccgggccgtctgcttgatcttgaa
caccagaacgccctcaagctcgacagcgtagagattctggtgctggacgaagccgaccgc
atgctggacatgggcttcatccacgacattcgtcgcgtgctgtcaaaactgccggcgcgt
cgtcagaacctgctgttctccgcgaccttctcggatgacatcaaagggctggcggaaaaa
ctgctgcacaacccgctggaagtggaagtggcgcgtcgcaacaccgcttctgagcaggtc
acccagcacgttcacttcgtggacaaaaagcgcaagcgggagctgctctctcagatgatc
ggcgaaggcaactggcagcaggtgctggtgtttacccgcaccaagcacggcgctaaccac
ctcgcggagcagctgaacaaagacggtatccgctctgcggcaatccacggtaacaagagt
cagggggcgcgtacccgtgcgctggccgacttcaaaaccggtgatatccgcgtgctggtt
gccaccgacatcgcggcgcgcggcatcgacatcgaagagctgccgcacgtagtgaactac
gagctgccgaacgtgccggaagactacgtgcaccgcattggccgtaccggacgcgctgct
gcgaccggggaagcgctgtcgctggtctgcgtagacgagcacaagctgctgcgcgatatc
gagcgcctgctgaagcgtgaaatcccgcgcattgcgctgccgggctacgagccggacccg
agcatcaaagccgagccgatcgtcaacggtcgccagcagcagcgtggcggcggtcgcggt
cagggcggcggtggtcgtggtcagggccagccgcgtcgtcagaacagcgacagcgccgcg
aagccgaccggtgataaaccgcgtcgtcagggcggcgatgcagcaaaacccgcgggcgag
aagtcgcgccgtcagggtggcgacagcgcgaagcagggccgctggttaggcgagggcgca
tcacgtccgtccggtgacggcgcgcgtcgtcgtcgtccgccgcgtaaagcctcctccggc
gaataa
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