Siccibacter colletis: KFZ77_07285
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Entry
KFZ77_07285 CDS
T08544
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
scol
Siccibacter colletis
Pathway
scol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KFZ77_07285 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scol03019
]
KFZ77_07285 (rne)
03009 Ribosome biogenesis [BR:
scol03009
]
KFZ77_07285 (rne)
Enzymes [BR:
scol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KFZ77_07285 (rne)
Messenger RNA biogenesis [BR:
scol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KFZ77_07285 (rne)
Ribosome biogenesis [BR:
scol03009
]
Prokaryotic type
rRNA processing factors
KFZ77_07285 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UYU33303
LinkDB
All DBs
Position
complement(1524333..1527584)
Genome browser
AA seq
1083 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSNYSSHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKENTQEVHAIVPVQVASYLLNEKREAISAIEKRQGGVRCVIVPNDQMQ
TPHYSVLRVRKGEETHTLSYMLPKLHEEAMALPSDDEYAERKRPEQPALATFVMPDVPPA
PQAEPKAAALPEKKADAKPQPASEAPGLFGRLVRSLKSLFASEPAVEAKPAAEEKKANPE
GKQNERRKPRQNNRRDRNSRDNRDRDRDNREGRDNRDNRDNRNDSAEGRESRDENRRNRR
QAQQQNAETRDARQQPVAEEGDKPKGRDEQPRRERNRRRSDDKRQAQQEVKALQRDEQPQ
PEVETEQDDRVQTLPRRKPRQLSQKVRITSEADNAAVETQHEPVAETSTEVATRPLPVAV
DSAVEQDENGEARTDAAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASP
EMASGKVWIRYPVASLPEQASEGFGEMETIVAEPVENTIAVAAQALTVEPEAPVAQPEAP
VVETTHPEVIAAPVDEQPQIVADEDQAVARTVAEEAKPAESETDRRDEIAAEIAQIAPAI
EDATVEAPQDAEATQEAVAPQEAAAPQEEVKADAPAAAAPVVAEQAPVAPVATSPVLPKN
APAVTRHATAPMTRAPAPEYVPEAPRHSDWVRPAFDFEGKGSAGGHSATHQATAPATRPP
AVE
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaacgcaactcagcaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgacctggatatcgaaagcccagggcacgagcagaaaaaagcgaac
atttacaaaggtaaaattacccgtatcgaacccagtcttgaagccgcgtttgttgactac
ggcgctgaaagacacggttttctccctcttaaagaaatcgcccgcgaatacttcccttca
aactactcgtcacacggtcgtccaaacatcaaagacgtgctgcgtgaaggtcaggaagtc
attgttcagatcgataaagaagaacgtggtaacaaaggtgccgcgctcacgacctttatc
agcctggcgggtagttatctggttctgatgccgaacaacccgcgcgccgggggtatctcc
cgccgcatcgaaggcgatgaccgcaccgagctgaaagaagcgctgtccagcctggaactg
ccggatggcatgggtcttatcgtgcgtaccgctggcgtgggcaaatctgccgaagcgctg
cagtgggatctgagcttccgccttaagcactgggaagctattcagaaagccgcggaaagc
cgccctgccccgttcctgatccatcaggaaagcaacgttatcgtgcgtgccttccgcgac
tacctgcgtcaggacatcggcgaaatccttatcgataacccgaaagtgctcgaacttgcg
cgccagcacatcgccgcgctgggtcgtccggatttcagcagcaaaattaagctctacacc
ggtgaaattccgctgttcagccactaccagatcgaatctcagattgagtctgccttccag
cgcgaagtgcgcctgccgtccggcggctcgatcgttattgactccaccgaagcgctgacc
gctatcgatatcaactccgctcgcgctacccgcggcggcgatatcgaagagaccgcgttc
aataccaacctggaagcggcagatgaaatcgcccgccagctgcgtctgcgcgacctcggc
ggcctgatcgttatcgacttcatcgacatgacgccggtacgccaccagcgcgcggttgag
aaccgtctgcgtgaagcggtacgtcaggatcgtgcgcgtatccagattagccatatctcc
cgtttcggcctgctggaaatgtcccgtcagcgcctcagcccgtcactgggcgagtccagc
catcacgtctgcccgcgctgtagcggcaccggcaccatccgtgataacgaatcgctggcg
ctctctattctgcgtctcattgaagaagaagcgctgaaagagaacacccaggaagtgcac
gctatcgttccggtgcaggttgcctcttacctgctgaacgaaaagcgcgaagccatcagc
gccatcgaaaaacgccagggcggcgtgcgctgcgtcatcgtgccaaacgatcagatgcag
accccgcactactccgtcctgcgcgtgcgcaagggcgaagagacgcataccctgagctac
atgctgccgaagctgcatgaagaagccatggcactgccttctgacgacgagtatgccgag
cgtaaacgtccggagcagcctgcactggccaccttcgtgatgcctgacgtaccgcctgcc
cctcaggctgagccgaaagctgccgcgctgcctgagaagaaagccgacgcgaagccgcag
ccagccagcgaggcgccgggcctgtttggccgactcgttcgctcgctgaaatcgctgttt
gcctctgagcctgccgttgaagctaaaccggctgctgaagagaagaaagccaaccccgaa
ggcaagcagaacgaacgtcgtaaaccgcgccagaacaatcgccgcgatcgcaacagccgt
gataaccgcgaccgtgaccgcgacaaccgtgaaggtcgtgacaaccgcgataatcgtgat
aaccgcaacgacagcgccgaaggccgcgagtctcgcgacgagaaccgccgcaaccgtcgt
caggcgcagcagcagaacgccgagacgcgtgatgcccgccagcagccggtcgctgaagaa
ggtgacaagccgaaagggcgtgacgagcagccgcgtcgtgaacgcaaccgtcgtcgctcc
gatgataagcgtcaggcccagcaggaagttaaagctctgcagcgcgacgagcagccgcag
ccagaggtggaaactgagcaggacgatcgcgttcagacgctgccgcgccgcaagccgcgt
cagctgagccagaaagtgcgtatcacctctgaagccgataacgccgctgttgaaacccag
cacgagccggttgccgagaccagcaccgaagtggcaacgcgtccgctgccggtggctgtc
gacagcgccgtcgagcaggatgaaaacggtgaagcgcgtaccgatgccgctggcatgccg
cgtcgctcacgccgttccccgcgtcacctgcgcgtcagcggtcagcgtcgtcgtcgttac
cgtgacgagcgttacccgacccagtcgccgatgccgctgaccgtcgcctgcgcatcgccg
gaaatggcctcgggtaaagtgtggatccgctatccggttgccagcctgccagagcaagcc
tctgaaggtttcggcgagatggaaaccatcgtggccgagccggtagaaaacaccattgcc
gtggccgcacaggcactgaccgtggagccagaagcaccggttgcacagcctgaagcgccg
gtcgttgaaaccacgcatccggaagtgattgccgcaccggtagacgagcagccccagatt
gtggctgacgaagaccaggcggttgcccgcacggtagcagaagaggcgaaaccggcggaa
agcgaaaccgaccgtcgcgacgagatcgctgctgaaatcgcgcagattgcaccggctatc
gaagacgcgaccgtagaagcaccgcaggacgccgaagcaactcaggaagcagtagcgcct
caggaagcggcagcaccgcaggaagaggttaaggccgacgcgcctgccgctgcagcaccg
gttgttgctgagcaagcgccggttgcgccggtagccacctctccggtactgccgaaaaat
gcgccagcggtcacgcgtcacgccacggccccaatgacccgcgcgccggcaccggaatat
gttccggaagcgccgcgtcacagcgactgggttcgtccggcgtttgacttcgagggtaaa
ggctctgcgggtggtcatagcgcgactcaccaggctaccgccccggcgacacgcccaccg
gcagtggagtaa
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