Siccibacter colletis: KFZ77_10590
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Entry
KFZ77_10590 CDS
T08544
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
scol
Siccibacter colletis
Pathway
scol02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
KFZ77_10590 (pdeR)
Enzymes [BR:
scol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
KFZ77_10590 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_8
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
UYU30348
LinkDB
All DBs
Position
2190101..2192095
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AA seq
664 aa
AA seq
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MKEYLEHNLLYRYLGTSSPYWRLLSDSNALQLSASEGADTRHAVALTDDQAGQIRAMTVI
TSSVTLTLSLFGEEAPVHLVGRKVSRREWAGSASAWNDTSSVARDLVQGLSFAEQVVSEA
NSVIVILDRLGNIQRFNRLSEEYTGMKEHEVIGQNVFKLFMTRSEAAASKRNISGFFRNG
SAYEVERWVKTRKGQRLFLFRNKFVHSGSGKNEIYLICSGTDITEERRAQERLRVLANTD
TITGLPNRNAVYELISDAITHRADDSQVGIVYLDLDNFKKVNDAYGHMFGDQLLQAVSLA
ILSCLDEGQVLARLGGDEFIVLATDTSQSALEAMSSRILTRLRQPFRIGLIEVYTGCSVG
ISLAPQHGVDRESLIRNADTAMYTAKESGRGKFCVFSPEMNQRVFEYLWLDTNLRKALEK
DQLIIHYQPKVTRSGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVMLDV
MQQVAKWREKSINLRVAVNVSARQLADQTIFSDLKQALRDLNFEYCPIDVELTESCLIEN
EELALTVIQQFSALGAQVHLDDFGTGYSSLSQLARFPLDAIKLDQSFVRDVHKQSVSQSL
VRAIVAVAQALNLQVIAEGVENTKEDAFLTKNGVNERQGYLFAKPMPAAAFEQWYQRYLA
RTAR
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagtatctggagcacaacctgctttatcgttacctcgggaccagcagtccctac
tggcgcttgctttctgacagcaatgcgctgcagctttccgcctccgaaggcgctgatacc
cgccacgccgtggcactcaccgatgaccaggccgggcaaattcgcgccatgaccgtcatc
acctccagcgttacgctcaccctttcgctgtttggcgaggaagcccctgttcacctggta
gggcgcaaggtctcacgccgggaatgggccggttccgcttccgcctggaacgacacctcg
tcggtggcacgcgatctggtgcagggactctcttttgccgaacaggtggtgtcggaagcc
aactcggtgatcgtcattcttgaccgcctcggcaatattcaacgctttaaccgactgagc
gaagagtacaccggcatgaaagagcatgaggtgattgggcagaacgtgttcaagctgttc
atgacccgcagcgaggccgccgcgtctaaacgcaatatttccggttttttccgcaacggc
agcgcttacgaagtggagcgctgggtaaaaacccgcaaggggcagcggctgttcctgttc
cgcaataagttcgtgcacagcgggagcgggaaaaatgaaatttatctcatctgctccggc
accgacatcaccgaggagcgacgcgcccaggagcggctgcgggtgctggctaataccgat
accatcaccggcctgccgaaccgcaacgcggtttatgagctgatcagcgatgccatcacc
caccgtgccgacgacagccaggtgggtattgtctatctcgatctcgacaacttcaaaaag
gtgaacgatgcctacgggcatatgtttggcgatcagctgctgcaggcggtgtcgctggca
atactgagctgtctggatgagggccaggtactggcgcgtctcggcggggatgagtttatc
gtgctggcaacggacacctcgcagagcgcgctggaggcgatgtcgtcgcgcattctcacg
cggctccgtcagccgttccgcattgggcttatcgaggtctataccggctgctcggtcggc
atctccctcgccccgcaacacggggtggatcgcgagagcctgatccgcaacgccgatacc
gcgatgtataccgcgaaagagagcggacgcggcaagttctgcgtcttctcacccgagatg
aaccagcgggtgtttgagtacctgtggctcgataccaacctgcgtaaagcgctggaaaag
gatcagctgatcattcactaccagccgaaagttacccggagcggggaagtccgcagcctg
gaagcgctggtgcgctggcagtcaccggagcgcggtctgatcccgccgctcgatttcatc
tcttatgctgaggagtccggcctcatcgtgccactcgggcgctgggtgatgcttgatgtg
atgcagcaggtggcgaagtggcgggaaaaaagcatcaatctgcgggttgcggtgaacgtt
tccgcgcgccagctggcagatcagacgatcttcagcgatctgaaacaggcgctgcgcgat
ctcaattttgaatactgtccgatagacgtggagctgaccgaaagctgcctgattgaaaac
gaggagcttgccctgacggtgatccagcagttcagcgcgctgggcgcccaggtgcatctg
gatgactttggcaccgggtattcctcgctgtcgcagctggcgcgtttcccgcttgatgcc
atcaagctcgatcaaagttttgtgcgcgatgttcacaagcagtccgtctcccagtcgctg
gtgcgcgctatcgtggcggtggcgcaggcgctgaatctgcaggtgattgcggaaggcgtg
gagaacacgaaagaagacgcctttcttaccaagaacggcgtcaatgaacggcagggttac
ctgtttgctaaacccatgcccgctgccgcattcgagcaatggtatcaacgttatctggca
cgcacggcgcgctag
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