Siccibacter colletis: KFZ77_11225
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Entry
KFZ77_11225 CDS
T08544
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
scol
Siccibacter colletis
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scol03016
]
KFZ77_11225 (rnd)
Enzymes [BR:
scol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
KFZ77_11225 (rnd)
Transfer RNA biogenesis [BR:
scol03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KFZ77_11225 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
UYU30465
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Position
complement(2328221..2329342)
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AA seq
373 aa
AA seq
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MNYQMITTDDALRTLCDAVRQSPAIALDTEFVRTRTYYPQLGLIQVFDGEQLALIDPLPI
TDWAPFKALLTDSAVTKFLHAGSEDLEVFSSRFGVMPEPMIDTQILASFTGEALSCGFAT
MVETWTGVKLDKSESRTDWLARPLTQRQCDYAAADVWYLLPIANKLVAKTEAAGWLPAAL
DECRLMIKRRSEVLTPDDAWREIGNAWQLRPRQLACLRLLAAWRLRHARERDMAVNFVVR
EENLWQVARYLPSSLGELSSLGLSGSEIRFHGKTLVDMVAQAQALPEEALPEPLANLVDM
PGYRKIFKAIKALVQQVGEEKGVSAELLASRRQINQLLNWHWKLKAQNNMPELISGWRGE
LLAEPLKAVLNDA
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaattatcagatgatcaccaccgacgacgcgctgcgcaccctgtgtgacgccgtgcgt
cagtcacccgccatcgccctggataccgaattcgttcgcacccgcacctattatccgcag
ctgggcctgattcaggtgtttgacggcgagcagctggcgctgatcgacccgctgcccatc
accgactgggcgccgttcaaagcgctgctgaccgacagcgccgtgaccaaattcctgcac
gcgggcagtgaagatcttgaagtgttctcctcgcgctttggcgtgatgccggagccgatg
atcgatacccagatcctggcgtcgtttaccggtgaagcgctctcctgcggtttcgccacg
atggttgaaacctggaccggcgtaaaactcgataagagcgagtcccgcaccgactggctg
gcgcgcccgctgacccagcgtcagtgcgactacgctgccgcagacgtctggtatctgctg
cccatcgccaacaagctggtggcaaaaaccgaagcagcaggctggctgcccgcggcgctt
gatgagtgccgtctgatgatcaaacgccgcagtgaagtgctgacgccagacgacgcgtgg
cgtgagattggtaacgcctggcagctgcgcccgcgtcagctcgcctgcctgaggctgctg
gccgcctggcgtctgcgccatgcccgcgagcgcgatatggcggtgaacttcgtggtgcgc
gaagagaatctctggcaggtggcgcgttatctgccgtcgagcctcggtgagctgagcagc
ctcggcctctccggcagcgaaatccgcttccacggtaagacgctggtggatatggtcgct
caggcgcaggccttgccggaagaggcgctgcccgagccgctggcaaatctggtggatatg
cccggctatcgcaaaatctttaaggcgattaaagcgctggtgcagcaggtgggagaagag
aagggcgttagcgcggaattactggcatcgcgtcgtcagattaaccagctgctgaactgg
cactggaagctgaaagcgcaaaataatatgccggaactgattagcggctggcgcggagaa
ttattagctgagccgttaaaagccgtgctgaatgacgcctga
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