Siccibacter colletis: KFZ77_15630
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Entry
KFZ77_15630 CDS
T08544
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
scol
Siccibacter colletis
Brite
KEGG Orthology (KO) [BR:
scol00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scol03009
]
KFZ77_15630 (rlmD)
Enzymes [BR:
scol01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KFZ77_15630 (rlmD)
Ribosome biogenesis [BR:
scol03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KFZ77_15630 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
PCMT
MTS
RrnaAD
Cons_hypoth95
TRM5-TYW2_MTfase
Methyltransf_11
Methyltransf_23
Ubie_methyltran
Methyltransf_4
Methyltransf_12
Methyltrans_SAM
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
UYU31256
LinkDB
All DBs
Position
complement(3249817..3251115)
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AA seq
432 aa
AA seq
DB search
MAQFYSAKRRNTTRDIITVTADDLDPFGQGVARHQGKALFIAGLLPGETAEVTLTEEKRQ
FAHARVKKRLTHSPERVTPACPHFNVCGGCQQQHVSETLQQSSKARALARMMHQPVDEII
SGPTWGYRRRARLGLNFAPRKQSLQMGFRMAGSNDLVDVHHCPILAPRLEALLPALRDCL
SDLHAVRRLGHVELVLADNGPLIVLRHLAPLSEADREKLERFSHSEQLSLFLAAESDKIA
QLNGDAPWYESDGLRLSFSPRDFIQVNDAVNQQMVARAIDWLAVNAQDRVLDLFCGMGNF
TLPLARRAQEVVGVEGVAALVEKGRENAARNGLQNVTFWHENLEEDVTRQPWAAAGFNKV
LLDPARAGAPGVMQHILRLAPEKVVYVSCNPTTLARDSDALRAGGYQITRLAMLDMFPHT
GHLESMALFEKA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttattcagcaaaacgtcgcaatactacgcgcgatatcattacggtcacc
gcagacgatctcgacccgtttggccagggcgtggcgcgtcatcagggtaaagcgctgttt
attgccgggctgctgcccggggaaacggctgaggtaaccctgaccgaggaaaagcgtcag
tttgctcatgcacgcgtcaaaaagcgtcttacccacagccccgagcgcgtcacaccggca
tgcccgcacttcaacgtgtgcggcggctgccagcagcagcacgtcagcgagacgcttcag
cagtccagtaaagcgcgggcgcttgcccgcatgatgcaccagccggttgatgagattatt
tcaggcccgacatggggttaccgacgccgggcgcggctcgggttgaattttgcgccacgt
aagcaaagtttacaaatgggttttcgcatggcgggatcgaacgatctggtggatgtgcat
cactgccccattctggcgccccgtcttgaggcactgcttccggcgctgcgtgactgcctg
agcgatttacacgcggtacggcgactcggccatgtggaacttgtgctggcggataatggt
ccactcatcgtgttacgccatctggcaccgctgagcgaggccgatcgcgaaaaactggaa
cgcttttcgcattccgaacagctttccctgtttctggccgcggaaagcgacaaaatagcc
cagcttaacggcgatgctccctggtatgaatcagacggactacgcttatccttcagcccg
cgcgattttatccaggtcaacgacgcggtgaatcagcagatggtggcccgggccatcgac
tggctggcggtgaacgcgcaggatcgcgtgctggatctgttctgcggcatgggcaacttt
accctgccgctcgcccggcgcgcgcaggaagtggtcggcgtcgaaggcgtggctgcgctg
gtggagaaaggccgtgagaatgcagcccggaatgggctgcagaatgtgaccttctggcac
gaaaatctggaagaggacgtcacgcgccagccgtgggcggcagcaggattcaacaaagtg
ttgctggacccggcccgtgccggcgcgcctggcgttatgcagcatattttacgtctggct
ccggaaaaagtggtgtatgtctcgtgtaacccaacgaccctcgcccgggacagcgacgcg
ctgcgggcggggggataccagattacgcggctggcgatgctggacatgttcccgcacact
gggcatcttgagtcgatggcgttattcgaaaaagcgtaa
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